Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgE and flgF are separated by 19 nucleotides flgF and flgG are separated by 137 nucleotides flgG and flgH are separated by 52 nucleotides flgH and flgI are separated by 11 nucleotides
NIAGMN_24170: flgE - flagellar hook protein FlgE, at 4,725,460 to 4,726,665
flgE
NIAGMN_24175: flgF - flagellar basal-body rod protein FlgF, at 4,726,685 to 4,727,440
flgF
NIAGMN_24180: flgG - flagellar basal-body rod protein FlgG, at 4,727,578 to 4,728,360
flgG
NIAGMN_24185: flgH - flagellar basal body L-ring protein FlgH, at 4,728,413 to 4,729,111
flgH
NIAGMN_24190: flgI - flagellar basal body P-ring protein FlgI, at 4,729,123 to 4,730,220
flgI
Position (kb) 4727
4728
4729 Strain fitness (log2 ratio) -1
0
1
2 at 4726.700 kb on + strand at 4726.901 kb on + strand, within flgF at 4726.901 kb on + strand, within flgF at 4727.311 kb on + strand, within flgF at 4727.631 kb on + strand at 4727.817 kb on - strand, within flgG at 4727.817 kb on - strand, within flgG at 4727.917 kb on + strand, within flgG at 4728.408 kb on + strand at 4728.433 kb on + strand at 4728.587 kb on - strand, within flgH at 4728.591 kb on - strand, within flgH at 4728.591 kb on - strand, within flgH at 4728.591 kb on - strand, within flgH at 4728.713 kb on - strand, within flgH at 4728.718 kb on + strand, within flgH at 4728.746 kb on + strand, within flgH at 4728.838 kb on + strand, within flgH at 4729.036 kb on - strand, within flgH at 4729.110 kb on - strand at 4729.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,726,700 + +1.4 4,726,901 + flgF NIAGMN_24175 0.29 +0.4 4,726,901 + flgF NIAGMN_24175 0.29 +1.2 4,727,311 + flgF NIAGMN_24175 0.83 -0.2 4,727,631 + +0.2 4,727,817 - flgG NIAGMN_24180 0.31 -0.2 4,727,817 - flgG NIAGMN_24180 0.31 -0.2 4,727,917 + flgG NIAGMN_24180 0.43 -0.8 4,728,408 + +0.4 4,728,433 + +0.9 4,728,587 - flgH NIAGMN_24185 0.25 +0.4 4,728,591 - flgH NIAGMN_24185 0.25 -0.1 4,728,591 - flgH NIAGMN_24185 0.25 +2.4 4,728,591 - flgH NIAGMN_24185 0.25 +1.0 4,728,713 - flgH NIAGMN_24185 0.43 +0.5 4,728,718 + flgH NIAGMN_24185 0.44 +1.9 4,728,746 + flgH NIAGMN_24185 0.48 -1.2 4,728,838 + flgH NIAGMN_24185 0.61 -1.3 4,729,036 - flgH NIAGMN_24185 0.89 +0.6 4,729,110 - +0.1 4,729,155 - +0.2
Or see this region's nucleotide sequence