Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgC and flgD are separated by 11 nucleotides flgD and flgE are separated by 24 nucleotides flgE and flgF are separated by 19 nucleotides flgF and flgG are separated by 137 nucleotides
NIAGMN_24160: flgC - flagellar basal body rod protein FlgC, at 4,724,324 to 4,724,728
flgC
NIAGMN_24165: flgD - flagellar hook assembly protein FlgD, at 4,724,740 to 4,725,435
flgD
NIAGMN_24170: flgE - flagellar hook protein FlgE, at 4,725,460 to 4,726,665
flgE
NIAGMN_24175: flgF - flagellar basal-body rod protein FlgF, at 4,726,685 to 4,727,440
flgF
NIAGMN_24180: flgG - flagellar basal-body rod protein FlgG, at 4,727,578 to 4,728,360
flgG
Position (kb) 4725
4726
4727 Strain fitness (log2 ratio) -1
0
1 at 4724.800 kb on - strand at 4725.274 kb on + strand, within flgD at 4725.275 kb on - strand, within flgD at 4725.275 kb on - strand, within flgD at 4725.547 kb on + strand at 4725.642 kb on + strand, within flgE at 4725.759 kb on + strand, within flgE at 4726.120 kb on - strand, within flgE at 4726.575 kb on + strand at 4726.700 kb on + strand at 4726.901 kb on + strand, within flgF at 4726.901 kb on + strand, within flgF at 4727.311 kb on + strand, within flgF at 4727.631 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,724,800 - -0.4 4,725,274 + flgD NIAGMN_24165 0.77 +1.1 4,725,275 - flgD NIAGMN_24165 0.77 +1.4 4,725,275 - flgD NIAGMN_24165 0.77 +0.0 4,725,547 + -0.2 4,725,642 + flgE NIAGMN_24170 0.15 +0.4 4,725,759 + flgE NIAGMN_24170 0.25 -1.4 4,726,120 - flgE NIAGMN_24170 0.55 +0.0 4,726,575 + +0.5 4,726,700 + +1.4 4,726,901 + flgF NIAGMN_24175 0.29 +0.4 4,726,901 + flgF NIAGMN_24175 0.29 +1.2 4,727,311 + flgF NIAGMN_24175 0.83 -0.2 4,727,631 + +0.2
Or see this region's nucleotide sequence