Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23620

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_23610 and NIAGMN_23615 are separated by 9 nucleotidesNIAGMN_23615 and NIAGMN_23620 are separated by 10 nucleotidesNIAGMN_23620 and NIAGMN_23625 are separated by 69 nucleotides NIAGMN_23610: NIAGMN_23610 - hypothetical protein, at 4,613,819 to 4,614,265 _23610 NIAGMN_23615: NIAGMN_23615 - bacteriocin, at 4,614,275 to 4,614,526 _23615 NIAGMN_23620: NIAGMN_23620 - hypothetical protein, at 4,614,537 to 4,615,802 _23620 NIAGMN_23625: NIAGMN_23625 - Uncharacterized protein H0150, at 4,615,872 to 4,624,253 _23625 Position (kb) 4614 4615 4616Strain fitness (log2 ratio) -2 -1 0 1at 4613.597 kb on + strandat 4613.724 kb on - strandat 4613.814 kb on + strandat 4613.814 kb on + strandat 4613.818 kb on + strandat 4614.112 kb on + strand, within NIAGMN_23610at 4614.115 kb on + strand, within NIAGMN_23610at 4614.130 kb on + strand, within NIAGMN_23610at 4614.495 kb on + strand, within NIAGMN_23615at 4614.692 kb on + strand, within NIAGMN_23620at 4614.750 kb on + strand, within NIAGMN_23620at 4614.751 kb on - strand, within NIAGMN_23620at 4614.751 kb on - strand, within NIAGMN_23620at 4614.863 kb on + strand, within NIAGMN_23620at 4614.864 kb on - strand, within NIAGMN_23620at 4615.056 kb on - strand, within NIAGMN_23620at 4615.132 kb on + strand, within NIAGMN_23620at 4615.225 kb on - strand, within NIAGMN_23620at 4615.228 kb on + strand, within NIAGMN_23620at 4615.610 kb on + strand, within NIAGMN_23620at 4615.769 kb on + strandat 4615.800 kb on + strandat 4615.818 kb on + strandat 4615.878 kb on + strandat 4615.965 kb on + strandat 4615.965 kb on + strandat 4615.965 kb on + strandat 4615.965 kb on + strandat 4615.965 kb on + strandat 4616.032 kb on + strandat 4616.032 kb on + strandat 4616.400 kb on + strandat 4616.400 kb on + strandat 4616.650 kb on + strandat 4616.696 kb on + strandat 4616.706 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,613,597 + -1.2
4,613,724 - +0.3
4,613,814 + -0.7
4,613,814 + +1.1
4,613,818 + -0.4
4,614,112 + NIAGMN_23610 0.66 +0.4
4,614,115 + NIAGMN_23610 0.66 -0.6
4,614,130 + NIAGMN_23610 0.70 -1.0
4,614,495 + NIAGMN_23615 0.87 +0.1
4,614,692 + NIAGMN_23620 0.12 -0.2
4,614,750 + NIAGMN_23620 0.17 +1.4
4,614,751 - NIAGMN_23620 0.17 -0.6
4,614,751 - NIAGMN_23620 0.17 -0.3
4,614,863 + NIAGMN_23620 0.26 +0.4
4,614,864 - NIAGMN_23620 0.26 -0.4
4,615,056 - NIAGMN_23620 0.41 -0.5
4,615,132 + NIAGMN_23620 0.47 -0.6
4,615,225 - NIAGMN_23620 0.54 -0.5
4,615,228 + NIAGMN_23620 0.55 +1.4
4,615,610 + NIAGMN_23620 0.85 -0.4
4,615,769 + -0.2
4,615,800 + +0.8
4,615,818 + -2.2
4,615,878 + +0.4
4,615,965 + +0.8
4,615,965 + -0.3
4,615,965 + -1.2
4,615,965 + +0.0
4,615,965 + -0.4
4,616,032 + -2.6
4,616,032 + +1.1
4,616,400 + +0.4
4,616,400 + -1.6
4,616,650 + -0.6
4,616,696 + -0.2
4,616,706 + -1.0

Or see this region's nucleotide sequence