Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_23575 and NIAGMN_23580 are separated by 14 nucleotides NIAGMN_23580 and NIAGMN_23585 are separated by 5 nucleotides NIAGMN_23585 and lomR are separated by 90 nucleotides
NIAGMN_23575: NIAGMN_23575 - phage tail protein, at 4,609,226 to 4,610,494
_23575
NIAGMN_23580: NIAGMN_23580 - Uncharacterized protein H0142, at 4,610,509 to 4,610,787
_23580
NIAGMN_23585: NIAGMN_23585 - hypothetical protein, at 4,610,793 to 4,611,410
_23585
NIAGMN_23590: lomR - Enterobacterial Ail/Lom protein, at 4,611,501 to 4,612,235
lomR
Position (kb) 4610
4611
4612 Strain fitness (log2 ratio) -1
0
1 at 4609.909 kb on + strand, within NIAGMN_23575 at 4609.910 kb on - strand, within NIAGMN_23575 at 4610.402 kb on - strand at 4610.531 kb on - strand at 4610.531 kb on - strand at 4610.724 kb on + strand, within NIAGMN_23580 at 4610.796 kb on + strand at 4610.882 kb on - strand, within NIAGMN_23585 at 4611.050 kb on + strand, within NIAGMN_23585 at 4611.367 kb on - strand at 4611.375 kb on - strand at 4611.409 kb on - strand at 4611.720 kb on - strand, within lomR at 4611.774 kb on - strand, within lomR at 4611.777 kb on - strand, within lomR at 4611.995 kb on - strand, within lomR at 4611.995 kb on - strand, within lomR at 4611.996 kb on + strand, within lomR at 4612.055 kb on + strand, within lomR at 4612.151 kb on + strand, within lomR at 4612.151 kb on + strand, within lomR at 4612.167 kb on + strand at 4612.388 kb on - strand at 4612.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,609,909 + NIAGMN_23575 0.54 -0.2 4,609,910 - NIAGMN_23575 0.54 -1.3 4,610,402 - -0.7 4,610,531 - -0.2 4,610,531 - -1.3 4,610,724 + NIAGMN_23580 0.77 -0.6 4,610,796 + +0.4 4,610,882 - NIAGMN_23585 0.14 -1.3 4,611,050 + NIAGMN_23585 0.42 +1.4 4,611,367 - -0.4 4,611,375 - +1.4 4,611,409 - +1.1 4,611,720 - lomR NIAGMN_23590 0.30 -0.4 4,611,774 - lomR NIAGMN_23590 0.37 -1.2 4,611,777 - lomR NIAGMN_23590 0.38 -1.2 4,611,995 - lomR NIAGMN_23590 0.67 -0.7 4,611,995 - lomR NIAGMN_23590 0.67 +0.4 4,611,996 + lomR NIAGMN_23590 0.67 -0.2 4,612,055 + lomR NIAGMN_23590 0.75 +0.4 4,612,151 + lomR NIAGMN_23590 0.88 +0.4 4,612,151 + lomR NIAGMN_23590 0.88 +0.2 4,612,167 + +0.6 4,612,388 - -0.2 4,612,407 - -1.1
Or see this region's nucleotide sequence