Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_23245 and NIAGMN_23250 are separated by 316 nucleotides NIAGMN_23250 and NIAGMN_23255 overlap by 4 nucleotides NIAGMN_23255 and NIAGMN_23260 overlap by 4 nucleotides NIAGMN_23260 and NIAGMN_23265 overlap by 28 nucleotides NIAGMN_23265 and exoD overlap by 4 nucleotides exoD and bet overlap by 4 nucleotides
NIAGMN_23245: NIAGMN_23245 - Ead/Ea22-like protein, at 4,571,419 to 4,572,192
_23245
NIAGMN_23250: NIAGMN_23250 - Cell division protein ZapA, at 4,572,509 to 4,572,724
_23250
NIAGMN_23255: NIAGMN_23255 - DUF1382 domain-containing protein, at 4,572,721 to 4,572,804
_23255
NIAGMN_23260: NIAGMN_23260 - DUF1382 domain-containing protein, at 4,572,801 to 4,572,992
_23260
NIAGMN_23265: NIAGMN_23265 - cruciferin, at 4,572,965 to 4,573,147
_23265
NIAGMN_23270: exoD - Putative uncharacterized protein ExoD, at 4,573,144 to 4,573,824
exoD
NIAGMN_23275: bet - phage recombination protein Bet, at 4,573,821 to 4,574,606
bet
Position (kb) 4572
4573 Strain fitness (log2 ratio) -2
-1
0
1 at 4572.941 kb on + strand, within NIAGMN_23260 at 4572.966 kb on + strand at 4573.009 kb on + strand, within NIAGMN_23265 at 4573.010 kb on - strand, within NIAGMN_23265 at 4573.656 kb on - strand, within exoD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,572,941 + NIAGMN_23260 0.73 -0.8 4,572,966 + +0.9 4,573,009 + NIAGMN_23265 0.24 -0.6 4,573,010 - NIAGMN_23265 0.25 -1.9 4,573,656 - exoD NIAGMN_23270 0.75 -0.6
Or see this region's nucleotide sequence