Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22660

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnac and cbl are separated by 101 nucleotidescbl and Asn_trna are separated by 37 nucleotidesAsn_trna and NIAGMN_22670 are separated by 193 nucleotides NIAGMN_22655: nac - nitrogen assimilation transcriptional regulator NAC, at 4,468,968 to 4,469,885 nac NIAGMN_22660: cbl - HTH-type transcriptional regulator Cbl, at 4,469,987 to 4,470,937 cbl NIAGMN_22665: Asn_trna - tRNA-Asn(gtt), at 4,470,975 to 4,471,050 _trna NIAGMN_22670: NIAGMN_22670 - EmmdR/YeeO family multidrug/toxin efflux MATE transporter, at 4,471,244 to 4,472,350 _22670 Position (kb) 4469 4470 4471Strain fitness (log2 ratio) -1 0 1 2at 4469.299 kb on + strand, within nacat 4469.840 kb on + strandat 4469.841 kb on - strandat 4470.095 kb on - strand, within cblat 4470.145 kb on + strand, within cblat 4470.256 kb on + strand, within cblat 4470.289 kb on + strand, within cblat 4470.304 kb on + strand, within cblat 4470.363 kb on + strand, within cblat 4470.490 kb on + strand, within cblat 4470.491 kb on - strand, within cblat 4470.530 kb on - strand, within cblat 4470.568 kb on - strand, within cblat 4470.576 kb on - strand, within cblat 4470.646 kb on + strand, within cblat 4470.787 kb on + strand, within cblat 4470.788 kb on - strand, within cblat 4470.829 kb on + strand, within cblat 4470.953 kb on - strandat 4471.204 kb on - strandat 4471.298 kb on - strandat 4471.474 kb on + strand, within NIAGMN_22670at 4471.505 kb on - strand, within NIAGMN_22670at 4471.507 kb on + strand, within NIAGMN_22670at 4471.743 kb on + strand, within NIAGMN_22670at 4471.915 kb on + strand, within NIAGMN_22670

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,469,299 + nac NIAGMN_22655 0.36 -0.3
4,469,840 + +1.4
4,469,841 - +0.9
4,470,095 - cbl NIAGMN_22660 0.11 +1.4
4,470,145 + cbl NIAGMN_22660 0.17 +1.0
4,470,256 + cbl NIAGMN_22660 0.28 -0.2
4,470,289 + cbl NIAGMN_22660 0.32 +2.0
4,470,304 + cbl NIAGMN_22660 0.33 -0.3
4,470,363 + cbl NIAGMN_22660 0.40 +0.5
4,470,490 + cbl NIAGMN_22660 0.53 +0.2
4,470,491 - cbl NIAGMN_22660 0.53 +1.1
4,470,530 - cbl NIAGMN_22660 0.57 +2.4
4,470,568 - cbl NIAGMN_22660 0.61 +1.4
4,470,576 - cbl NIAGMN_22660 0.62 +0.4
4,470,646 + cbl NIAGMN_22660 0.69 -0.8
4,470,787 + cbl NIAGMN_22660 0.84 +0.4
4,470,788 - cbl NIAGMN_22660 0.84 -0.2
4,470,829 + cbl NIAGMN_22660 0.89 +1.1
4,470,953 - -0.9
4,471,204 - -0.2
4,471,298 - -0.4
4,471,474 + NIAGMN_22670 0.21 -0.3
4,471,505 - NIAGMN_22670 0.24 +0.7
4,471,507 + NIAGMN_22670 0.24 +0.1
4,471,743 + NIAGMN_22670 0.45 -0.3
4,471,915 + NIAGMN_22670 0.61 -0.6

Or see this region's nucleotide sequence