Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22645

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcobT and ldtA are separated by 61 nucleotidesldtA and Asn_trna are separated by 55 nucleotidesAsn_trna and nac are separated by 325 nucleotides NIAGMN_22640: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,466,435 to 4,467,514 cobT NIAGMN_22645: ldtA - L,D-transpeptidase, at 4,467,576 to 4,468,511 ldtA NIAGMN_22650: Asn_trna - tRNA-Asn(gtt), at 4,468,567 to 4,468,642 _trna NIAGMN_22655: nac - nitrogen assimilation transcriptional regulator NAC, at 4,468,968 to 4,469,885 nac Position (kb) 4467 4468 4469Strain fitness (log2 ratio) -2 -1 0 1 2at 4466.668 kb on + strand, within cobTat 4466.669 kb on - strand, within cobTat 4466.770 kb on - strand, within cobTat 4466.782 kb on + strand, within cobTat 4466.836 kb on + strand, within cobTat 4466.904 kb on + strand, within cobTat 4466.904 kb on + strand, within cobTat 4466.912 kb on - strand, within cobTat 4466.952 kb on + strand, within cobTat 4467.074 kb on - strand, within cobTat 4467.239 kb on + strand, within cobTat 4467.329 kb on - strand, within cobTat 4467.330 kb on + strand, within cobTat 4467.440 kb on + strandat 4467.630 kb on - strandat 4467.764 kb on + strand, within ldtAat 4467.923 kb on + strand, within ldtAat 4467.942 kb on - strand, within ldtAat 4468.138 kb on + strand, within ldtAat 4468.139 kb on - strand, within ldtAat 4468.545 kb on - strandat 4468.922 kb on + strandat 4469.299 kb on + strand, within nac

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,466,668 + cobT NIAGMN_22640 0.22 +0.1
4,466,669 - cobT NIAGMN_22640 0.22 +0.3
4,466,770 - cobT NIAGMN_22640 0.31 -0.0
4,466,782 + cobT NIAGMN_22640 0.32 +0.5
4,466,836 + cobT NIAGMN_22640 0.37 -0.6
4,466,904 + cobT NIAGMN_22640 0.43 +0.1
4,466,904 + cobT NIAGMN_22640 0.43 +1.4
4,466,912 - cobT NIAGMN_22640 0.44 -0.3
4,466,952 + cobT NIAGMN_22640 0.48 -0.2
4,467,074 - cobT NIAGMN_22640 0.59 -0.4
4,467,239 + cobT NIAGMN_22640 0.74 -0.4
4,467,329 - cobT NIAGMN_22640 0.83 +0.4
4,467,330 + cobT NIAGMN_22640 0.83 -0.4
4,467,440 + -0.6
4,467,630 - +0.2
4,467,764 + ldtA NIAGMN_22645 0.20 -0.1
4,467,923 + ldtA NIAGMN_22645 0.37 -0.7
4,467,942 - ldtA NIAGMN_22645 0.39 -2.3
4,468,138 + ldtA NIAGMN_22645 0.60 +1.4
4,468,139 - ldtA NIAGMN_22645 0.60 +2.4
4,468,545 - -2.4
4,468,922 + +1.7
4,469,299 + nac NIAGMN_22655 0.36 -0.3

Or see this region's nucleotide sequence