Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22380

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrfbE and rfaB are separated by 24 nucleotidesrfaB and NIAGMN_22385 are separated by 19 nucleotides NIAGMN_22375: rfbE - GDP-perosamine synthase RfbE/PerA, at 4,417,157 to 4,418,251 rfbE NIAGMN_22380: rfaB - glycosyl transferase, at 4,418,276 to 4,419,490 rfaB NIAGMN_22385: NIAGMN_22385 - GDP-mannose 4,6-dehydratase, at 4,419,510 to 4,420,628 _22385 Position (kb) 4418 4419 4420Strain fitness (log2 ratio) -1 0 1at 4418.040 kb on + strand, within rfbEat 4419.810 kb on + strand, within NIAGMN_22385at 4420.211 kb on + strand, within NIAGMN_22385at 4420.322 kb on + strand, within NIAGMN_22385at 4420.369 kb on + strand, within NIAGMN_22385

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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4,418,040 + rfbE NIAGMN_22375 0.81 +0.4
4,419,810 + NIAGMN_22385 0.27 -0.2
4,420,211 + NIAGMN_22385 0.63 +1.4
4,420,322 + NIAGMN_22385 0.73 -0.3
4,420,369 + NIAGMN_22385 0.77 -0.2

Or see this region's nucleotide sequence