Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtB and mdtA overlap by 1 nucleotides mdtA and NIAGMN_22155 are separated by 279 nucleotides NIAGMN_22155 and NIAGMN_22165 are separated by 271 nucleotides NIAGMN_22165 and ibsA are separated by 271 nucleotides
NIAGMN_22140: mdtB - multidrug efflux RND transporter permease subunit MdtB, at 4,366,554 to 4,369,676
mdtB
NIAGMN_22145: mdtA - multidrug efflux RND transporter subunit MdtA, at 4,369,676 to 4,370,923
mdtA
NIAGMN_22155: NIAGMN_22155 - Type I toxin-antitoxin system Ibs family toxin, at 4,371,203 to 4,371,259
_22155
NIAGMN_22165: NIAGMN_22165 - Type I toxin-antitoxin system Ibs family toxin, at 4,371,531 to 4,371,587
_22165
NIAGMN_22175: ibsA - Small toxic protein IbsA, at 4,371,859 to 4,371,918
ibsA
Position (kb) 4369
4370
4371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4368.771 kb on - strand, within mdtB at 4368.777 kb on - strand, within mdtB at 4368.864 kb on + strand, within mdtB at 4369.010 kb on + strand, within mdtB at 4369.181 kb on + strand, within mdtB at 4369.379 kb on + strand at 4369.626 kb on - strand at 4370.093 kb on + strand, within mdtA at 4370.111 kb on + strand, within mdtA at 4370.111 kb on + strand, within mdtA at 4370.386 kb on + strand, within mdtA at 4370.621 kb on + strand, within mdtA at 4370.659 kb on + strand, within mdtA at 4370.665 kb on + strand, within mdtA at 4370.668 kb on + strand, within mdtA at 4370.678 kb on - strand, within mdtA at 4370.880 kb on - strand at 4370.880 kb on - strand at 4370.909 kb on - strand at 4370.928 kb on - strand at 4370.966 kb on + strand at 4370.966 kb on + strand at 4370.967 kb on - strand at 4371.078 kb on + strand at 4371.187 kb on - strand at 4371.187 kb on - strand at 4371.190 kb on + strand at 4371.214 kb on - strand, within NIAGMN_22155 at 4371.214 kb on - strand, within NIAGMN_22155 at 4371.234 kb on + strand, within NIAGMN_22155 at 4371.235 kb on - strand, within NIAGMN_22155 at 4371.241 kb on + strand, within NIAGMN_22155 at 4371.242 kb on - strand, within NIAGMN_22155 at 4371.242 kb on - strand, within NIAGMN_22155 at 4371.255 kb on - strand at 4371.255 kb on - strand at 4371.255 kb on - strand at 4371.258 kb on - strand at 4371.306 kb on + strand at 4371.408 kb on - strand at 4371.514 kb on + strand at 4371.562 kb on + strand, within NIAGMN_22165 at 4371.562 kb on + strand, within NIAGMN_22165 at 4371.563 kb on - strand, within NIAGMN_22165 at 4371.568 kb on + strand, within NIAGMN_22165 at 4371.569 kb on - strand, within NIAGMN_22165 at 4371.583 kb on - strand at 4371.583 kb on - strand at 4371.586 kb on - strand at 4371.592 kb on - strand at 4371.888 kb on - strand, within ibsA at 4371.888 kb on - strand, within ibsA at 4371.894 kb on - strand, within ibsA at 4371.901 kb on - strand, within ibsA at 4371.916 kb on + strand at 4371.916 kb on + strand at 4371.916 kb on + strand at 4371.917 kb on - strand at 4371.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 4,368,771 - mdtB NIAGMN_22140 0.71 -1.6 4,368,777 - mdtB NIAGMN_22140 0.71 -0.0 4,368,864 + mdtB NIAGMN_22140 0.74 +0.6 4,369,010 + mdtB NIAGMN_22140 0.79 -0.4 4,369,181 + mdtB NIAGMN_22140 0.84 +2.2 4,369,379 + -0.5 4,369,626 - +0.4 4,370,093 + mdtA NIAGMN_22145 0.33 +0.0 4,370,111 + mdtA NIAGMN_22145 0.35 +0.4 4,370,111 + mdtA NIAGMN_22145 0.35 -1.3 4,370,386 + mdtA NIAGMN_22145 0.57 +1.0 4,370,621 + mdtA NIAGMN_22145 0.76 +1.4 4,370,659 + mdtA NIAGMN_22145 0.79 +0.4 4,370,665 + mdtA NIAGMN_22145 0.79 +0.0 4,370,668 + mdtA NIAGMN_22145 0.79 +1.4 4,370,678 - mdtA NIAGMN_22145 0.80 +0.9 4,370,880 - -1.2 4,370,880 - -0.2 4,370,909 - +2.4 4,370,928 - +0.9 4,370,966 + +0.9 4,370,966 + -0.7 4,370,967 - -0.2 4,371,078 + -1.2 4,371,187 - -2.8 4,371,187 - -1.5 4,371,190 + -0.0 4,371,214 - NIAGMN_22155 0.19 -0.6 4,371,214 - NIAGMN_22155 0.19 +0.4 4,371,234 + NIAGMN_22155 0.54 -0.1 4,371,235 - NIAGMN_22155 0.56 +1.9 4,371,241 + NIAGMN_22155 0.67 -0.2 4,371,242 - NIAGMN_22155 0.68 +1.4 4,371,242 - NIAGMN_22155 0.68 -0.5 4,371,255 - -0.3 4,371,255 - -1.6 4,371,255 - +0.7 4,371,258 - +1.4 4,371,306 + +0.1 4,371,408 - +1.4 4,371,514 + +0.1 4,371,562 + NIAGMN_22165 0.54 +0.4 4,371,562 + NIAGMN_22165 0.54 -1.5 4,371,563 - NIAGMN_22165 0.56 +0.4 4,371,568 + NIAGMN_22165 0.65 -0.8 4,371,569 - NIAGMN_22165 0.67 +0.1 4,371,583 - -0.0 4,371,583 - +1.4 4,371,586 - -0.6 4,371,592 - +0.3 4,371,888 - ibsA NIAGMN_22175 0.48 +0.1 4,371,888 - ibsA NIAGMN_22175 0.48 +0.1 4,371,894 - ibsA NIAGMN_22175 0.58 -0.6 4,371,901 - ibsA NIAGMN_22175 0.70 +0.1 4,371,916 + +1.9 4,371,916 + -0.6 4,371,916 + +1.4 4,371,917 - +0.1 4,371,917 - -0.2
Or see this region's nucleotide sequence