Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18780

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttra8 and NIAGMN_18770 are separated by 238 nucleotidesNIAGMN_18770 and NIAGMN_18775 overlap by 8 nucleotidesNIAGMN_18775 and NIAGMN_18780 overlap by 26 nucleotidesNIAGMN_18780 and NIAGMN_18785 overlap by 4 nucleotidesNIAGMN_18785 and NIAGMN_18790 overlap by 4 nucleotides NIAGMN_18765: tra8 - IS30 family transposase, at 3,710,374 to 3,711,129 tra8 NIAGMN_18770: NIAGMN_18770 - hypothetical protein, at 3,711,368 to 3,711,484 _18770 NIAGMN_18775: NIAGMN_18775 - endonuclease, at 3,711,477 to 3,712,043 _18775 NIAGMN_18780: NIAGMN_18780 - protein NinG, at 3,712,018 to 3,712,629 _18780 NIAGMN_18785: NIAGMN_18785 - Serine/threonine-protein phosphatase, at 3,712,626 to 3,713,291 _18785 NIAGMN_18790: NIAGMN_18790 - Antitermination protein Q, at 3,713,288 to 3,713,911 _18790 Position (kb) 3712 3713Strain fitness (log2 ratio) -2 -1 0 1 2at 3711.415 kb on + strand, within NIAGMN_18770at 3711.613 kb on + strand, within NIAGMN_18775at 3711.617 kb on + strand, within NIAGMN_18775at 3711.816 kb on - strand, within NIAGMN_18775at 3711.895 kb on + strand, within NIAGMN_18775at 3711.914 kb on + strand, within NIAGMN_18775at 3711.981 kb on + strand, within NIAGMN_18775at 3711.982 kb on - strand, within NIAGMN_18775at 3712.085 kb on - strand, within NIAGMN_18780at 3712.092 kb on + strand, within NIAGMN_18780at 3713.439 kb on + strand, within NIAGMN_18790at 3713.439 kb on + strand, within NIAGMN_18790at 3713.440 kb on - strand, within NIAGMN_18790at 3713.492 kb on + strand, within NIAGMN_18790at 3713.493 kb on - strand, within NIAGMN_18790at 3713.493 kb on - strand, within NIAGMN_18790at 3713.493 kb on - strand, within NIAGMN_18790at 3713.557 kb on + strand, within NIAGMN_18790at 3713.571 kb on + strand, within NIAGMN_18790at 3713.606 kb on + strand, within NIAGMN_18790

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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3,711,415 + NIAGMN_18770 0.40 -1.1
3,711,613 + NIAGMN_18775 0.24 +1.1
3,711,617 + NIAGMN_18775 0.25 +0.1
3,711,816 - NIAGMN_18775 0.60 +0.5
3,711,895 + NIAGMN_18775 0.74 -1.6
3,711,914 + NIAGMN_18775 0.77 +0.2
3,711,981 + NIAGMN_18775 0.89 +0.7
3,711,982 - NIAGMN_18775 0.89 +0.5
3,712,085 - NIAGMN_18780 0.11 -1.1
3,712,092 + NIAGMN_18780 0.12 +2.1
3,713,439 + NIAGMN_18790 0.24 -0.7
3,713,439 + NIAGMN_18790 0.24 +1.5
3,713,440 - NIAGMN_18790 0.24 -0.1
3,713,492 + NIAGMN_18790 0.33 +0.2
3,713,493 - NIAGMN_18790 0.33 +1.0
3,713,493 - NIAGMN_18790 0.33 +0.7
3,713,493 - NIAGMN_18790 0.33 -2.6
3,713,557 + NIAGMN_18790 0.43 -0.8
3,713,571 + NIAGMN_18790 0.45 -0.6
3,713,606 + NIAGMN_18790 0.51 +0.8

Or see this region's nucleotide sequence