Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tra8 and NIAGMN_18770 are separated by 238 nucleotides NIAGMN_18770 and NIAGMN_18775 overlap by 8 nucleotides NIAGMN_18775 and NIAGMN_18780 overlap by 26 nucleotides NIAGMN_18780 and NIAGMN_18785 overlap by 4 nucleotides NIAGMN_18785 and NIAGMN_18790 overlap by 4 nucleotides
NIAGMN_18765: tra8 - IS30 family transposase, at 3,710,374 to 3,711,129
tra8
NIAGMN_18770: NIAGMN_18770 - hypothetical protein, at 3,711,368 to 3,711,484
_18770
NIAGMN_18775: NIAGMN_18775 - endonuclease, at 3,711,477 to 3,712,043
_18775
NIAGMN_18780: NIAGMN_18780 - protein NinG, at 3,712,018 to 3,712,629
_18780
NIAGMN_18785: NIAGMN_18785 - Serine/threonine-protein phosphatase, at 3,712,626 to 3,713,291
_18785
NIAGMN_18790: NIAGMN_18790 - Antitermination protein Q, at 3,713,288 to 3,713,911
_18790
Position (kb)
3712
3713 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3711.415 kb on + strand, within NIAGMN_18770 at 3711.613 kb on + strand, within NIAGMN_18775 at 3711.617 kb on + strand, within NIAGMN_18775 at 3711.816 kb on - strand, within NIAGMN_18775 at 3711.895 kb on + strand, within NIAGMN_18775 at 3711.914 kb on + strand, within NIAGMN_18775 at 3711.981 kb on + strand, within NIAGMN_18775 at 3711.982 kb on - strand, within NIAGMN_18775 at 3712.085 kb on - strand, within NIAGMN_18780 at 3712.092 kb on + strand, within NIAGMN_18780 at 3713.439 kb on + strand, within NIAGMN_18790 at 3713.439 kb on + strand, within NIAGMN_18790 at 3713.440 kb on - strand, within NIAGMN_18790 at 3713.492 kb on + strand, within NIAGMN_18790 at 3713.493 kb on - strand, within NIAGMN_18790 at 3713.493 kb on - strand, within NIAGMN_18790 at 3713.493 kb on - strand, within NIAGMN_18790 at 3713.557 kb on + strand, within NIAGMN_18790 at 3713.571 kb on + strand, within NIAGMN_18790 at 3713.606 kb on + strand, within NIAGMN_18790
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 3,711,415 + NIAGMN_18770 0.40 -1.1 3,711,613 + NIAGMN_18775 0.24 +1.1 3,711,617 + NIAGMN_18775 0.25 +0.1 3,711,816 - NIAGMN_18775 0.60 +0.5 3,711,895 + NIAGMN_18775 0.74 -1.6 3,711,914 + NIAGMN_18775 0.77 +0.2 3,711,981 + NIAGMN_18775 0.89 +0.7 3,711,982 - NIAGMN_18775 0.89 +0.5 3,712,085 - NIAGMN_18780 0.11 -1.1 3,712,092 + NIAGMN_18780 0.12 +2.1 3,713,439 + NIAGMN_18790 0.24 -0.7 3,713,439 + NIAGMN_18790 0.24 +1.5 3,713,440 - NIAGMN_18790 0.24 -0.1 3,713,492 + NIAGMN_18790 0.33 +0.2 3,713,493 - NIAGMN_18790 0.33 +1.0 3,713,493 - NIAGMN_18790 0.33 +0.7 3,713,493 - NIAGMN_18790 0.33 -2.6 3,713,557 + NIAGMN_18790 0.43 -0.8 3,713,571 + NIAGMN_18790 0.45 -0.6 3,713,606 + NIAGMN_18790 0.51 +0.8
Or see this region's nucleotide sequence