Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_18720 and alpA are separated by 99 nucleotides alpA and xerD are separated by 322 nucleotides
NIAGMN_18720: NIAGMN_18720 - DUF6387 domain-containing protein, at 3,701,776 to 3,702,627
_18720
NIAGMN_18725: alpA - dipicolinate synthase, at 3,702,727 to 3,702,933
alpA
NIAGMN_18730: xerD - site-specific integrase, at 3,703,256 to 3,704,461
xerD
Position (kb)
3702
3703 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3701.731 kb on + strand at 3701.740 kb on + strand at 3701.741 kb on - strand at 3701.744 kb on + strand at 3701.744 kb on + strand at 3701.745 kb on - strand at 3701.750 kb on - strand at 3701.750 kb on - strand at 3701.750 kb on - strand at 3701.755 kb on + strand at 3701.756 kb on - strand at 3701.828 kb on + strand at 3701.865 kb on - strand, within NIAGMN_18720 at 3701.865 kb on - strand, within NIAGMN_18720 at 3701.865 kb on - strand, within NIAGMN_18720 at 3701.873 kb on - strand, within NIAGMN_18720 at 3701.912 kb on - strand, within NIAGMN_18720 at 3701.912 kb on - strand, within NIAGMN_18720 at 3702.022 kb on - strand, within NIAGMN_18720 at 3702.083 kb on + strand, within NIAGMN_18720 at 3702.084 kb on - strand, within NIAGMN_18720 at 3702.084 kb on - strand, within NIAGMN_18720 at 3702.084 kb on - strand, within NIAGMN_18720 at 3702.293 kb on + strand, within NIAGMN_18720 at 3702.306 kb on - strand, within NIAGMN_18720 at 3702.398 kb on + strand, within NIAGMN_18720 at 3702.403 kb on - strand, within NIAGMN_18720 at 3702.403 kb on - strand, within NIAGMN_18720 at 3702.403 kb on - strand, within NIAGMN_18720 at 3702.407 kb on + strand, within NIAGMN_18720 at 3702.412 kb on - strand, within NIAGMN_18720 at 3702.412 kb on - strand, within NIAGMN_18720 at 3702.413 kb on + strand, within NIAGMN_18720 at 3702.443 kb on - strand, within NIAGMN_18720 at 3702.444 kb on + strand, within NIAGMN_18720 at 3702.496 kb on - strand, within NIAGMN_18720 at 3702.530 kb on + strand, within NIAGMN_18720 at 3702.531 kb on - strand, within NIAGMN_18720 at 3702.641 kb on + strand at 3702.689 kb on - strand at 3702.689 kb on - strand at 3702.727 kb on - strand at 3703.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 3,701,731 + +1.1 3,701,740 + +0.9 3,701,741 - -0.1 3,701,744 + +0.5 3,701,744 + -0.7 3,701,745 - -0.8 3,701,750 - -0.3 3,701,750 - +0.3 3,701,750 - +0.3 3,701,755 + -0.0 3,701,756 - +1.5 3,701,828 + -0.4 3,701,865 - NIAGMN_18720 0.10 -0.1 3,701,865 - NIAGMN_18720 0.10 -0.4 3,701,865 - NIAGMN_18720 0.10 +0.7 3,701,873 - NIAGMN_18720 0.11 +0.7 3,701,912 - NIAGMN_18720 0.16 +0.5 3,701,912 - NIAGMN_18720 0.16 +0.5 3,702,022 - NIAGMN_18720 0.29 -1.1 3,702,083 + NIAGMN_18720 0.36 -0.4 3,702,084 - NIAGMN_18720 0.36 +2.5 3,702,084 - NIAGMN_18720 0.36 +0.2 3,702,084 - NIAGMN_18720 0.36 -0.5 3,702,293 + NIAGMN_18720 0.61 -0.1 3,702,306 - NIAGMN_18720 0.62 +0.9 3,702,398 + NIAGMN_18720 0.73 -2.4 3,702,403 - NIAGMN_18720 0.74 -1.8 3,702,403 - NIAGMN_18720 0.74 +0.2 3,702,403 - NIAGMN_18720 0.74 -0.3 3,702,407 + NIAGMN_18720 0.74 +1.5 3,702,412 - NIAGMN_18720 0.75 +0.5 3,702,412 - NIAGMN_18720 0.75 -0.7 3,702,413 + NIAGMN_18720 0.75 -1.2 3,702,443 - NIAGMN_18720 0.78 -0.7 3,702,444 + NIAGMN_18720 0.78 +0.5 3,702,496 - NIAGMN_18720 0.85 +0.5 3,702,530 + NIAGMN_18720 0.88 +0.5 3,702,531 - NIAGMN_18720 0.89 +0.3 3,702,641 + +0.9 3,702,689 - +0.7 3,702,689 - +0.3 3,702,727 - +1.5 3,703,208 - +0.2
Or see this region's nucleotide sequence