Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18665

Experiment: Bas61

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas61
3,682,177	-	ygaV	NIAGMN_18650	0.67	+0.0
3,682,226	-	ygaV	NIAGMN_18650	0.83	+1.0
3,682,256	-				-0.4
3,682,328	+				-0.1
3,682,328	+				+0.5
3,682,328	+				-0.1
3,682,328	+				-0.5
3,682,330	+				-0.3
3,682,330	+				-0.8
3,682,330	+				+1.5
3,682,357	+				-0.2
3,682,445	-				-0.1
3,682,446	+				+0.3
3,682,458	-				+0.5
3,682,541	+	yqaE	NIAGMN_18655	0.52	-0.2
3,682,542	-	yqaE	NIAGMN_18655	0.53	+0.5
3,682,544	+	yqaE	NIAGMN_18655	0.54	-1.2
3,682,544	+	yqaE	NIAGMN_18655	0.54	-1.4
3,682,544	+	yqaE	NIAGMN_18655	0.54	+1.0
3,682,547	+	yqaE	NIAGMN_18655	0.56	-0.8
3,682,569	+	yqaE	NIAGMN_18655	0.70	-0.4
3,682,569	+	yqaE	NIAGMN_18655	0.70	+2.1
3,682,570	-	yqaE	NIAGMN_18655	0.70	-0.2
3,682,571	+	yqaE	NIAGMN_18655	0.71	+0.3
3,682,614	+				-1.1
3,682,659	-				+0.0
3,682,659	-				+0.3
3,682,695	+				-0.3
3,682,695	+				-0.7
3,682,696	-				-0.9
3,682,696	-				+0.8
3,682,696	-				+0.6
3,682,699	+				-0.6
3,682,699	+				+0.4
3,682,700	-				+0.5
3,682,700	-				+0.1
3,682,994	+	kbp	NIAGMN_18660	0.65	+1.0
3,682,994	+	kbp	NIAGMN_18660	0.65	+1.0
3,682,994	+	kbp	NIAGMN_18660	0.65	+0.3
3,682,995	-	kbp	NIAGMN_18660	0.66	+1.1
3,683,002	+	kbp	NIAGMN_18660	0.67	+0.0
3,683,042	+	kbp	NIAGMN_18660	0.76	-0.1
3,683,054	-	kbp	NIAGMN_18660	0.79	-0.8
3,683,060	+	kbp	NIAGMN_18660	0.80	-0.5
3,683,061	-	kbp	NIAGMN_18660	0.80	-0.3
3,683,065	+	kbp	NIAGMN_18660	0.81	-0.7
3,683,148	-				-1.0
3,683,148	-				-0.1
3,683,151	+				+0.0
3,683,151	+				-2.3
3,683,151	+				+0.8
3,683,152	-				+0.1
3,683,152	-				-1.7
3,683,177	-				+1.2
3,683,195	+				-0.7
3,683,196	-				+0.4
3,683,210	+				-1.0
3,683,324	-	csiR	NIAGMN_18665	0.26	-0.6
3,683,407	+	csiR	NIAGMN_18665	0.39	+0.2
3,683,408	-	csiR	NIAGMN_18665	0.39	+0.5
3,683,477	-	csiR	NIAGMN_18665	0.49	+0.5
3,683,564	-	csiR	NIAGMN_18665	0.62	-0.8
3,683,609	-	csiR	NIAGMN_18665	0.69	-0.7
3,683,768	-				-0.4
3,683,803	+				-1.8
3,683,804	-				+0.2
3,683,804	-				+1.2
3,683,804	-				+1.9
3,683,804	-				+1.8
3,683,869	+				+1.5
3,683,910	+				-1.5
3,683,910	+				+0.0
3,683,911	-				+0.2
3,683,927	-				-0.2
3,683,935	-				-0.8
3,683,948	-				-1.5
3,683,968	+				-0.1
3,684,027	-	gabP	NIAGMN_18670	0.14	-0.5
3,684,027	-	gabP	NIAGMN_18670	0.14	+0.4
3,684,107	-	gabP	NIAGMN_18670	0.20	-1.3
3,684,107	-	gabP	NIAGMN_18670	0.20	-0.4
3,684,173	+	gabP	NIAGMN_18670	0.24	+0.9
3,684,174	-	gabP	NIAGMN_18670	0.24	-0.1
3,684,174	-	gabP	NIAGMN_18670	0.24	+0.2
3,684,218	-	gabP	NIAGMN_18670	0.27	+0.2
3,684,218	-	gabP	NIAGMN_18670	0.27	-1.4
3,684,230	+	gabP	NIAGMN_18670	0.28	+0.3
3,684,289	+	gabP	NIAGMN_18670	0.33	-1.8
3,684,317	+	gabP	NIAGMN_18670	0.35	-0.2
3,684,318	-	gabP	NIAGMN_18670	0.35	-1.5
3,684,352	+	gabP	NIAGMN_18670	0.37	+0.5
3,684,352	+	gabP	NIAGMN_18670	0.37	+1.5
3,684,352	+	gabP	NIAGMN_18670	0.37	+0.5
3,684,353	-	gabP	NIAGMN_18670	0.37	-0.5
3,684,356	-	gabP	NIAGMN_18670	0.37	-0.5
3,684,388	+	gabP	NIAGMN_18670	0.40	-0.1
3,684,388	+	gabP	NIAGMN_18670	0.40	-0.7
3,684,388	+	gabP	NIAGMN_18670	0.40	+1.2
3,684,389	-	gabP	NIAGMN_18670	0.40	+1.8
3,684,389	-	gabP	NIAGMN_18670	0.40	+1.3
3,684,390	+	gabP	NIAGMN_18670	0.40	-0.1
3,684,454	+	gabP	NIAGMN_18670	0.44	+1.5
3,684,455	-	gabP	NIAGMN_18670	0.44	-0.8
3,684,455	-	gabP	NIAGMN_18670	0.44	-0.3
3,684,455	-	gabP	NIAGMN_18670	0.44	+1.5
3,684,477	+	gabP	NIAGMN_18670	0.46	+0.6
3,684,488	+	gabP	NIAGMN_18670	0.47	+2.2
3,684,489	-	gabP	NIAGMN_18670	0.47	-1.3
3,684,489	-	gabP	NIAGMN_18670	0.47	-0.1
3,684,534	+	gabP	NIAGMN_18670	0.50	+0.3
3,684,535	-	gabP	NIAGMN_18670	0.50	+0.3
3,684,622	+	gabP	NIAGMN_18670	0.56	-0.4
3,684,623	-	gabP	NIAGMN_18670	0.56	+0.2
3,684,649	-	gabP	NIAGMN_18670	0.58	-1.1
3,684,735	+	gabP	NIAGMN_18670	0.64	+0.8
3,684,806	-	gabP	NIAGMN_18670	0.69	+0.5