Strain Fitness in Escherichia coli ECRC102 around NIAGMN_14440

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdcrB and yhhQ are separated by 72 nucleotidesyhhQ and NIAGMN_14440 are separated by 220 nucleotidesNIAGMN_14440 and zntA are separated by 101 nucleotides NIAGMN_14430: dcrB - phage sensitivity protein DcrB, at 2,871,970 to 2,872,527 dcrB NIAGMN_14435: yhhQ - 7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguani ne transporter, at 2,872,600 to 2,873,265 yhhQ NIAGMN_14440: NIAGMN_14440 - Sulfur carrier protein TusA, at 2,873,486 to 2,873,731 _14440 NIAGMN_14445: zntA - Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA, at 2,873,833 to 2,876,031 zntA Position (kb) 2873 2874Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2872.509 kb on - strandat 2872.576 kb on + strandat 2872.576 kb on + strandat 2872.576 kb on + strandat 2872.656 kb on + strandat 2872.656 kb on + strandat 2872.657 kb on - strandat 2872.657 kb on - strandat 2872.664 kb on - strandat 2872.664 kb on - strandat 2872.666 kb on + strandat 2872.666 kb on + strandat 2872.666 kb on + strandat 2872.666 kb on + strandat 2872.667 kb on - strand, within yhhQat 2872.674 kb on - strand, within yhhQat 2872.703 kb on - strand, within yhhQat 2872.719 kb on - strand, within yhhQat 2872.756 kb on - strand, within yhhQat 2872.994 kb on + strand, within yhhQat 2872.994 kb on + strand, within yhhQat 2872.994 kb on + strand, within yhhQat 2872.994 kb on + strand, within yhhQat 2872.994 kb on + strand, within yhhQat 2872.994 kb on + strand, within yhhQat 2872.994 kb on + strand, within yhhQat 2872.994 kb on + strand, within yhhQat 2872.994 kb on + strand, within yhhQat 2872.995 kb on - strand, within yhhQat 2872.995 kb on - strand, within yhhQat 2872.995 kb on - strand, within yhhQat 2872.995 kb on - strand, within yhhQat 2872.995 kb on - strand, within yhhQat 2872.995 kb on - strand, within yhhQat 2872.995 kb on - strand, within yhhQat 2872.999 kb on + strand, within yhhQat 2873.000 kb on - strand, within yhhQat 2873.000 kb on - strand, within yhhQat 2873.015 kb on + strand, within yhhQat 2873.016 kb on - strand, within yhhQat 2873.016 kb on - strand, within yhhQat 2873.016 kb on - strand, within yhhQat 2873.016 kb on - strand, within yhhQat 2873.055 kb on + strand, within yhhQat 2873.056 kb on - strand, within yhhQat 2873.082 kb on + strand, within yhhQat 2873.082 kb on + strand, within yhhQat 2873.082 kb on + strand, within yhhQat 2873.083 kb on - strand, within yhhQat 2873.083 kb on - strand, within yhhQat 2873.086 kb on + strand, within yhhQat 2873.086 kb on + strand, within yhhQat 2873.087 kb on - strand, within yhhQat 2873.087 kb on - strand, within yhhQat 2873.087 kb on - strand, within yhhQat 2873.112 kb on + strand, within yhhQat 2873.124 kb on + strand, within yhhQat 2873.125 kb on - strand, within yhhQat 2873.180 kb on + strand, within yhhQat 2873.180 kb on + strand, within yhhQat 2873.185 kb on - strand, within yhhQat 2873.237 kb on + strandat 2873.237 kb on + strandat 2873.238 kb on - strandat 2873.238 kb on - strandat 2873.265 kb on + strandat 2873.265 kb on + strandat 2873.266 kb on - strandat 2873.266 kb on - strandat 2873.266 kb on - strandat 2873.266 kb on - strandat 2873.266 kb on - strandat 2873.271 kb on - strandat 2873.308 kb on - strandat 2873.311 kb on + strandat 2873.311 kb on + strandat 2873.311 kb on + strandat 2873.312 kb on - strandat 2873.312 kb on - strandat 2873.325 kb on + strandat 2873.326 kb on - strandat 2873.326 kb on - strandat 2873.330 kb on + strandat 2873.331 kb on - strandat 2873.335 kb on + strandat 2873.335 kb on + strandat 2873.335 kb on + strandat 2873.335 kb on + strandat 2873.335 kb on + strandat 2873.335 kb on + strandat 2873.335 kb on + strandat 2873.335 kb on + strandat 2873.336 kb on - strandat 2873.336 kb on - strandat 2873.336 kb on - strandat 2873.336 kb on - strandat 2873.336 kb on - strandat 2873.336 kb on - strandat 2873.339 kb on - strandat 2873.339 kb on - strandat 2873.373 kb on + strandat 2873.373 kb on + strandat 2873.381 kb on + strandat 2873.381 kb on + strandat 2873.382 kb on - strandat 2873.450 kb on + strandat 2873.469 kb on + strandat 2873.774 kb on - strandat 2873.835 kb on - strandat 2873.854 kb on + strandat 2873.912 kb on - strandat 2873.912 kb on - strandat 2873.970 kb on + strandat 2874.141 kb on + strand, within zntAat 2874.145 kb on - strand, within zntAat 2874.204 kb on + strand, within zntAat 2874.204 kb on + strand, within zntAat 2874.205 kb on - strand, within zntAat 2874.205 kb on - strand, within zntAat 2874.276 kb on + strand, within zntAat 2874.390 kb on + strand, within zntAat 2874.390 kb on + strand, within zntAat 2874.390 kb on + strand, within zntAat 2874.390 kb on + strand, within zntAat 2874.390 kb on + strand, within zntAat 2874.390 kb on + strand, within zntAat 2874.391 kb on - strand, within zntAat 2874.391 kb on - strand, within zntAat 2874.391 kb on - strand, within zntAat 2874.391 kb on - strand, within zntAat 2874.395 kb on - strand, within zntAat 2874.398 kb on - strand, within zntAat 2874.398 kb on - strand, within zntAat 2874.436 kb on - strand, within zntAat 2874.481 kb on + strand, within zntAat 2874.482 kb on - strand, within zntAat 2874.482 kb on - strand, within zntAat 2874.482 kb on - strand, within zntAat 2874.482 kb on - strand, within zntAat 2874.661 kb on - strand, within zntAat 2874.663 kb on + strand, within zntAat 2874.664 kb on - strand, within zntA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,872,509 - +0.7
2,872,576 + -0.6
2,872,576 + -1.2
2,872,576 + +0.1
2,872,656 + +1.0
2,872,656 + -0.5
2,872,657 - -0.6
2,872,657 - +0.6
2,872,664 - +0.8
2,872,664 - -0.5
2,872,666 + -1.0
2,872,666 + +0.2
2,872,666 + -0.4
2,872,666 + -0.3
2,872,667 - yhhQ NIAGMN_14435 0.10 +0.7
2,872,674 - yhhQ NIAGMN_14435 0.11 +0.2
2,872,703 - yhhQ NIAGMN_14435 0.15 -0.0
2,872,719 - yhhQ NIAGMN_14435 0.18 -0.6
2,872,756 - yhhQ NIAGMN_14435 0.23 +0.1
2,872,994 + yhhQ NIAGMN_14435 0.59 -0.2
2,872,994 + yhhQ NIAGMN_14435 0.59 -0.9
2,872,994 + yhhQ NIAGMN_14435 0.59 +2.7
2,872,994 + yhhQ NIAGMN_14435 0.59 -0.3
2,872,994 + yhhQ NIAGMN_14435 0.59 +1.0
2,872,994 + yhhQ NIAGMN_14435 0.59 -0.1
2,872,994 + yhhQ NIAGMN_14435 0.59 -0.7
2,872,994 + yhhQ NIAGMN_14435 0.59 +0.1
2,872,994 + yhhQ NIAGMN_14435 0.59 +0.5
2,872,995 - yhhQ NIAGMN_14435 0.59 +1.0
2,872,995 - yhhQ NIAGMN_14435 0.59 -0.9
2,872,995 - yhhQ NIAGMN_14435 0.59 -0.8
2,872,995 - yhhQ NIAGMN_14435 0.59 -0.3
2,872,995 - yhhQ NIAGMN_14435 0.59 +0.3
2,872,995 - yhhQ NIAGMN_14435 0.59 -0.0
2,872,995 - yhhQ NIAGMN_14435 0.59 -0.1
2,872,999 + yhhQ NIAGMN_14435 0.60 +0.0
2,873,000 - yhhQ NIAGMN_14435 0.60 +0.8
2,873,000 - yhhQ NIAGMN_14435 0.60 -1.8
2,873,015 + yhhQ NIAGMN_14435 0.62 -0.4
2,873,016 - yhhQ NIAGMN_14435 0.62 +0.7
2,873,016 - yhhQ NIAGMN_14435 0.62 +0.4
2,873,016 - yhhQ NIAGMN_14435 0.62 -1.0
2,873,016 - yhhQ NIAGMN_14435 0.62 -0.1
2,873,055 + yhhQ NIAGMN_14435 0.68 +0.6
2,873,056 - yhhQ NIAGMN_14435 0.68 +0.6
2,873,082 + yhhQ NIAGMN_14435 0.72 -0.6
2,873,082 + yhhQ NIAGMN_14435 0.72 +0.1
2,873,082 + yhhQ NIAGMN_14435 0.72 -0.4
2,873,083 - yhhQ NIAGMN_14435 0.73 -0.6
2,873,083 - yhhQ NIAGMN_14435 0.73 -0.3
2,873,086 + yhhQ NIAGMN_14435 0.73 -0.2
2,873,086 + yhhQ NIAGMN_14435 0.73 +0.9
2,873,087 - yhhQ NIAGMN_14435 0.73 +0.1
2,873,087 - yhhQ NIAGMN_14435 0.73 +0.2
2,873,087 - yhhQ NIAGMN_14435 0.73 +0.2
2,873,112 + yhhQ NIAGMN_14435 0.77 +0.5
2,873,124 + yhhQ NIAGMN_14435 0.79 +1.7
2,873,125 - yhhQ NIAGMN_14435 0.79 +0.4
2,873,180 + yhhQ NIAGMN_14435 0.87 +0.7
2,873,180 + yhhQ NIAGMN_14435 0.87 +0.5
2,873,185 - yhhQ NIAGMN_14435 0.88 +0.4
2,873,237 + +1.7
2,873,237 + -1.0
2,873,238 - -0.6
2,873,238 - +1.1
2,873,265 + -0.5
2,873,265 + +0.3
2,873,266 - +0.7
2,873,266 - -0.5
2,873,266 - -0.8
2,873,266 - -0.3
2,873,266 - +0.7
2,873,271 - -1.0
2,873,308 - -0.0
2,873,311 + +0.6
2,873,311 + -0.2
2,873,311 + -0.1
2,873,312 - +0.4
2,873,312 - +0.3
2,873,325 + +0.3
2,873,326 - +0.2
2,873,326 - +0.1
2,873,330 + -0.6
2,873,331 - +1.6
2,873,335 + +1.0
2,873,335 + +1.2
2,873,335 + +1.7
2,873,335 + +0.1
2,873,335 + +0.4
2,873,335 + -0.6
2,873,335 + +0.2
2,873,335 + +0.7
2,873,336 - +0.4
2,873,336 - +0.1
2,873,336 - +0.7
2,873,336 - -0.2
2,873,336 - +3.5
2,873,336 - -0.2
2,873,339 - +1.7
2,873,339 - -1.5
2,873,373 + +0.9
2,873,373 + -0.5
2,873,381 + -1.0
2,873,381 + -0.7
2,873,382 - -0.3
2,873,450 + +0.1
2,873,469 + -0.1
2,873,774 - -0.9
2,873,835 - -0.2
2,873,854 + +0.4
2,873,912 - -0.8
2,873,912 - -1.6
2,873,970 + -0.2
2,874,141 + zntA NIAGMN_14445 0.14 -0.8
2,874,145 - zntA NIAGMN_14445 0.14 -1.8
2,874,204 + zntA NIAGMN_14445 0.17 -0.2
2,874,204 + zntA NIAGMN_14445 0.17 -1.0
2,874,205 - zntA NIAGMN_14445 0.17 -0.7
2,874,205 - zntA NIAGMN_14445 0.17 -0.6
2,874,276 + zntA NIAGMN_14445 0.20 +2.1
2,874,390 + zntA NIAGMN_14445 0.25 +0.4
2,874,390 + zntA NIAGMN_14445 0.25 -0.3
2,874,390 + zntA NIAGMN_14445 0.25 +0.9
2,874,390 + zntA NIAGMN_14445 0.25 -0.1
2,874,390 + zntA NIAGMN_14445 0.25 +0.9
2,874,390 + zntA NIAGMN_14445 0.25 +1.0
2,874,391 - zntA NIAGMN_14445 0.25 +0.0
2,874,391 - zntA NIAGMN_14445 0.25 -0.4
2,874,391 - zntA NIAGMN_14445 0.25 +1.1
2,874,391 - zntA NIAGMN_14445 0.25 +0.7
2,874,395 - zntA NIAGMN_14445 0.26 +0.4
2,874,398 - zntA NIAGMN_14445 0.26 -0.4
2,874,398 - zntA NIAGMN_14445 0.26 +0.1
2,874,436 - zntA NIAGMN_14445 0.27 +0.4
2,874,481 + zntA NIAGMN_14445 0.29 +0.1
2,874,482 - zntA NIAGMN_14445 0.30 -0.2
2,874,482 - zntA NIAGMN_14445 0.30 -0.4
2,874,482 - zntA NIAGMN_14445 0.30 +0.2
2,874,482 - zntA NIAGMN_14445 0.30 -0.4
2,874,661 - zntA NIAGMN_14445 0.38 +0.1
2,874,663 + zntA NIAGMN_14445 0.38 +0.4
2,874,664 - zntA NIAGMN_14445 0.38 +0.3

Or see this region's nucleotide sequence