Strain Fitness in Escherichia coli ECRC102 around NIAGMN_11585

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsbp and pfkA are separated by 318 nucleotidespfkA and fieF are separated by 180 nucleotides NIAGMN_11575: sbp - sulfate/thiosulfate ABC transporter substrate-binding protein Sbp, at 2,291,942 to 2,292,931 sbp NIAGMN_11585: pfkA - 6-phosphofructokinase, at 2,293,250 to 2,294,212 pfkA NIAGMN_11590: fieF - CDF family cation-efflux transporter FieF, at 2,294,393 to 2,295,295 fieF Position (kb) 2293 2294 2295Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2292.256 kb on + strand, within sbpat 2292.257 kb on - strand, within sbpat 2292.311 kb on + strand, within sbpat 2292.312 kb on - strand, within sbpat 2292.312 kb on - strand, within sbpat 2292.312 kb on - strand, within sbpat 2292.312 kb on - strand, within sbpat 2292.388 kb on - strand, within sbpat 2292.447 kb on + strand, within sbpat 2292.465 kb on + strand, within sbpat 2292.465 kb on + strand, within sbpat 2292.568 kb on + strand, within sbpat 2292.569 kb on - strand, within sbpat 2292.572 kb on + strand, within sbpat 2292.572 kb on + strand, within sbpat 2292.573 kb on - strand, within sbpat 2292.597 kb on + strand, within sbpat 2292.675 kb on + strand, within sbpat 2292.816 kb on + strand, within sbpat 2292.816 kb on + strand, within sbpat 2292.816 kb on + strand, within sbpat 2292.817 kb on - strand, within sbpat 2292.817 kb on - strand, within sbpat 2292.817 kb on - strand, within sbpat 2292.846 kb on + strandat 2292.846 kb on + strandat 2292.846 kb on + strandat 2292.847 kb on - strandat 2292.868 kb on + strandat 2292.914 kb on + strandat 2292.914 kb on + strandat 2292.915 kb on - strandat 2292.915 kb on - strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.945 kb on + strandat 2292.946 kb on - strandat 2292.946 kb on - strandat 2292.946 kb on - strandat 2292.946 kb on - strandat 2292.946 kb on - strandat 2292.946 kb on - strandat 2292.946 kb on - strandat 2292.946 kb on - strandat 2293.028 kb on + strandat 2293.028 kb on + strandat 2293.031 kb on - strandat 2293.031 kb on - strandat 2293.031 kb on - strandat 2293.251 kb on + strandat 2293.252 kb on - strandat 2293.252 kb on - strandat 2293.254 kb on + strandat 2293.255 kb on - strandat 2293.352 kb on + strand, within pfkAat 2293.355 kb on - strand, within pfkAat 2293.359 kb on - strand, within pfkAat 2293.359 kb on - strand, within pfkAat 2293.402 kb on - strand, within pfkAat 2293.402 kb on - strand, within pfkAat 2293.540 kb on + strand, within pfkAat 2293.540 kb on + strand, within pfkAat 2293.541 kb on - strand, within pfkAat 2293.541 kb on - strand, within pfkAat 2293.541 kb on - strand, within pfkAat 2293.541 kb on - strand, within pfkAat 2293.541 kb on - strand, within pfkAat 2293.809 kb on + strand, within pfkAat 2293.893 kb on + strand, within pfkAat 2294.054 kb on + strand, within pfkAat 2294.054 kb on + strand, within pfkAat 2294.216 kb on + strandat 2294.241 kb on + strandat 2294.299 kb on - strandat 2294.299 kb on - strandat 2294.299 kb on - strandat 2294.299 kb on - strandat 2294.299 kb on - strandat 2294.299 kb on - strandat 2294.302 kb on - strandat 2294.302 kb on - strandat 2294.304 kb on - strandat 2294.304 kb on - strandat 2294.385 kb on + strandat 2294.385 kb on + strandat 2294.386 kb on - strandat 2294.386 kb on - strandat 2294.386 kb on - strandat 2294.395 kb on - strandat 2294.405 kb on - strandat 2294.405 kb on - strandat 2294.405 kb on - strandat 2294.423 kb on - strandat 2294.423 kb on - strandat 2294.486 kb on - strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.512 kb on + strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.513 kb on - strand, within fieFat 2294.563 kb on + strand, within fieFat 2294.642 kb on - strand, within fieFat 2294.642 kb on - strand, within fieFat 2294.642 kb on - strand, within fieFat 2294.666 kb on + strand, within fieFat 2294.667 kb on - strand, within fieFat 2294.682 kb on - strand, within fieFat 2294.701 kb on - strand, within fieFat 2294.711 kb on + strand, within fieFat 2294.719 kb on + strand, within fieFat 2294.719 kb on + strand, within fieFat 2294.720 kb on - strand, within fieFat 2294.721 kb on + strand, within fieFat 2294.723 kb on + strand, within fieFat 2294.723 kb on + strand, within fieFat 2294.723 kb on + strand, within fieFat 2294.723 kb on + strand, within fieFat 2294.723 kb on + strand, within fieFat 2294.723 kb on + strand, within fieFat 2294.723 kb on + strand, within fieFat 2294.724 kb on - strand, within fieFat 2294.724 kb on - strand, within fieFat 2294.724 kb on - strand, within fieFat 2294.724 kb on - strand, within fieFat 2294.724 kb on - strand, within fieFat 2294.728 kb on + strand, within fieFat 2294.729 kb on - strand, within fieFat 2294.730 kb on + strand, within fieFat 2294.731 kb on - strand, within fieFat 2294.731 kb on - strand, within fieFat 2294.821 kb on + strand, within fieFat 2294.821 kb on + strand, within fieFat 2294.822 kb on - strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.840 kb on + strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.841 kb on - strand, within fieFat 2294.845 kb on + strand, within fieFat 2294.845 kb on + strand, within fieFat 2294.846 kb on - strand, within fieFat 2294.921 kb on + strand, within fieFat 2294.979 kb on - strand, within fieFat 2295.012 kb on - strand, within fieFat 2295.012 kb on - strand, within fieFat 2295.028 kb on + strand, within fieFat 2295.034 kb on + strand, within fieFat 2295.034 kb on + strand, within fieFat 2295.034 kb on + strand, within fieFat 2295.034 kb on + strand, within fieFat 2295.034 kb on + strand, within fieFat 2295.034 kb on + strand, within fieFat 2295.035 kb on - strand, within fieFat 2295.035 kb on - strand, within fieFat 2295.035 kb on - strand, within fieFat 2295.035 kb on - strand, within fieFat 2295.035 kb on - strand, within fieFat 2295.035 kb on - strand, within fieFat 2295.035 kb on - strand, within fieFat 2295.035 kb on - strand, within fieFat 2295.198 kb on + strand, within fieFat 2295.198 kb on + strand, within fieFat 2295.198 kb on + strand, within fieFat 2295.199 kb on - strand, within fieF

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,292,256 + sbp NIAGMN_11575 0.32 +1.8
2,292,257 - sbp NIAGMN_11575 0.32 +0.0
2,292,311 + sbp NIAGMN_11575 0.37 +0.3
2,292,312 - sbp NIAGMN_11575 0.37 +0.2
2,292,312 - sbp NIAGMN_11575 0.37 -0.0
2,292,312 - sbp NIAGMN_11575 0.37 -1.3
2,292,312 - sbp NIAGMN_11575 0.37 +1.6
2,292,388 - sbp NIAGMN_11575 0.45 +0.2
2,292,447 + sbp NIAGMN_11575 0.51 -0.5
2,292,465 + sbp NIAGMN_11575 0.53 -0.9
2,292,465 + sbp NIAGMN_11575 0.53 +1.0
2,292,568 + sbp NIAGMN_11575 0.63 +0.2
2,292,569 - sbp NIAGMN_11575 0.63 -1.6
2,292,572 + sbp NIAGMN_11575 0.64 -0.4
2,292,572 + sbp NIAGMN_11575 0.64 -1.0
2,292,573 - sbp NIAGMN_11575 0.64 +0.2
2,292,597 + sbp NIAGMN_11575 0.66 -0.8
2,292,675 + sbp NIAGMN_11575 0.74 -0.2
2,292,816 + sbp NIAGMN_11575 0.88 +0.6
2,292,816 + sbp NIAGMN_11575 0.88 +0.4
2,292,816 + sbp NIAGMN_11575 0.88 +0.0
2,292,817 - sbp NIAGMN_11575 0.88 -0.8
2,292,817 - sbp NIAGMN_11575 0.88 +0.2
2,292,817 - sbp NIAGMN_11575 0.88 +0.0
2,292,846 + -0.8
2,292,846 + +0.3
2,292,846 + -0.2
2,292,847 - +1.2
2,292,868 + +0.4
2,292,914 + -1.3
2,292,914 + -0.2
2,292,915 - +1.8
2,292,915 - -0.3
2,292,945 + +1.2
2,292,945 + -0.2
2,292,945 + -0.2
2,292,945 + +0.5
2,292,945 + -0.3
2,292,945 + -2.9
2,292,945 + +0.1
2,292,945 + +0.3
2,292,945 + -0.6
2,292,945 + -0.3
2,292,945 + -0.6
2,292,946 - -0.2
2,292,946 - -0.4
2,292,946 - -0.3
2,292,946 - -0.0
2,292,946 - -0.5
2,292,946 - +1.2
2,292,946 - -0.3
2,292,946 - +0.1
2,293,028 + +0.4
2,293,028 + +0.2
2,293,031 - +0.5
2,293,031 - +0.8
2,293,031 - +0.2
2,293,251 + +0.8
2,293,252 - -1.1
2,293,252 - -0.7
2,293,254 + +0.4
2,293,255 - -1.2
2,293,352 + pfkA NIAGMN_11585 0.11 -1.1
2,293,355 - pfkA NIAGMN_11585 0.11 -1.1
2,293,359 - pfkA NIAGMN_11585 0.11 -0.2
2,293,359 - pfkA NIAGMN_11585 0.11 +1.8
2,293,402 - pfkA NIAGMN_11585 0.16 +0.8
2,293,402 - pfkA NIAGMN_11585 0.16 +0.8
2,293,540 + pfkA NIAGMN_11585 0.30 -0.2
2,293,540 + pfkA NIAGMN_11585 0.30 +0.8
2,293,541 - pfkA NIAGMN_11585 0.30 +0.2
2,293,541 - pfkA NIAGMN_11585 0.30 +1.8
2,293,541 - pfkA NIAGMN_11585 0.30 +0.8
2,293,541 - pfkA NIAGMN_11585 0.30 +0.8
2,293,541 - pfkA NIAGMN_11585 0.30 +0.8
2,293,809 + pfkA NIAGMN_11585 0.58 +0.2
2,293,893 + pfkA NIAGMN_11585 0.67 +2.8
2,294,054 + pfkA NIAGMN_11585 0.83 +0.2
2,294,054 + pfkA NIAGMN_11585 0.83 -0.2
2,294,216 + +0.2
2,294,241 + +1.8
2,294,299 - +0.0
2,294,299 - +0.1
2,294,299 - -1.2
2,294,299 - -1.0
2,294,299 - -0.1
2,294,299 - +0.5
2,294,302 - -0.7
2,294,302 - +0.2
2,294,304 - +0.2
2,294,304 - +2.5
2,294,385 + +0.2
2,294,385 + +0.3
2,294,386 - +1.2
2,294,386 - +2.3
2,294,386 - -0.6
2,294,395 - +1.2
2,294,405 - -0.1
2,294,405 - -0.2
2,294,405 - -0.5
2,294,423 - +1.8
2,294,423 - +0.5
2,294,486 - fieF NIAGMN_11590 0.10 -0.2
2,294,512 + fieF NIAGMN_11590 0.13 +1.3
2,294,512 + fieF NIAGMN_11590 0.13 +0.1
2,294,512 + fieF NIAGMN_11590 0.13 +0.3
2,294,512 + fieF NIAGMN_11590 0.13 -0.6
2,294,512 + fieF NIAGMN_11590 0.13 -0.9
2,294,512 + fieF NIAGMN_11590 0.13 -0.4
2,294,512 + fieF NIAGMN_11590 0.13 -0.3
2,294,512 + fieF NIAGMN_11590 0.13 +0.2
2,294,512 + fieF NIAGMN_11590 0.13 -0.4
2,294,512 + fieF NIAGMN_11590 0.13 +0.6
2,294,512 + fieF NIAGMN_11590 0.13 +0.1
2,294,513 - fieF NIAGMN_11590 0.13 -0.4
2,294,513 - fieF NIAGMN_11590 0.13 +0.8
2,294,513 - fieF NIAGMN_11590 0.13 -0.3
2,294,513 - fieF NIAGMN_11590 0.13 -0.0
2,294,513 - fieF NIAGMN_11590 0.13 +0.4
2,294,513 - fieF NIAGMN_11590 0.13 +0.3
2,294,513 - fieF NIAGMN_11590 0.13 -1.6
2,294,513 - fieF NIAGMN_11590 0.13 -1.1
2,294,513 - fieF NIAGMN_11590 0.13 +0.8
2,294,513 - fieF NIAGMN_11590 0.13 -0.1
2,294,513 - fieF NIAGMN_11590 0.13 +0.3
2,294,513 - fieF NIAGMN_11590 0.13 -0.3
2,294,563 + fieF NIAGMN_11590 0.19 -1.4
2,294,642 - fieF NIAGMN_11590 0.28 -0.1
2,294,642 - fieF NIAGMN_11590 0.28 -0.2
2,294,642 - fieF NIAGMN_11590 0.28 -0.2
2,294,666 + fieF NIAGMN_11590 0.30 -2.5
2,294,667 - fieF NIAGMN_11590 0.30 +0.5
2,294,682 - fieF NIAGMN_11590 0.32 -0.2
2,294,701 - fieF NIAGMN_11590 0.34 +0.1
2,294,711 + fieF NIAGMN_11590 0.35 -0.1
2,294,719 + fieF NIAGMN_11590 0.36 -0.1
2,294,719 + fieF NIAGMN_11590 0.36 -0.7
2,294,720 - fieF NIAGMN_11590 0.36 +0.6
2,294,721 + fieF NIAGMN_11590 0.36 -0.6
2,294,723 + fieF NIAGMN_11590 0.37 +0.2
2,294,723 + fieF NIAGMN_11590 0.37 -0.2
2,294,723 + fieF NIAGMN_11590 0.37 -2.1
2,294,723 + fieF NIAGMN_11590 0.37 +0.8
2,294,723 + fieF NIAGMN_11590 0.37 -1.2
2,294,723 + fieF NIAGMN_11590 0.37 -1.1
2,294,723 + fieF NIAGMN_11590 0.37 +1.2
2,294,724 - fieF NIAGMN_11590 0.37 +0.4
2,294,724 - fieF NIAGMN_11590 0.37 -0.3
2,294,724 - fieF NIAGMN_11590 0.37 -0.5
2,294,724 - fieF NIAGMN_11590 0.37 +0.3
2,294,724 - fieF NIAGMN_11590 0.37 -0.7
2,294,728 + fieF NIAGMN_11590 0.37 -0.6
2,294,729 - fieF NIAGMN_11590 0.37 +0.0
2,294,730 + fieF NIAGMN_11590 0.37 -0.6
2,294,731 - fieF NIAGMN_11590 0.37 -0.2
2,294,731 - fieF NIAGMN_11590 0.37 -0.2
2,294,821 + fieF NIAGMN_11590 0.47 -1.2
2,294,821 + fieF NIAGMN_11590 0.47 +0.2
2,294,822 - fieF NIAGMN_11590 0.48 -1.2
2,294,840 + fieF NIAGMN_11590 0.50 +0.4
2,294,840 + fieF NIAGMN_11590 0.50 -0.2
2,294,840 + fieF NIAGMN_11590 0.50 -1.2
2,294,840 + fieF NIAGMN_11590 0.50 +0.8
2,294,840 + fieF NIAGMN_11590 0.50 +1.2
2,294,840 + fieF NIAGMN_11590 0.50 +1.3
2,294,840 + fieF NIAGMN_11590 0.50 -0.4
2,294,840 + fieF NIAGMN_11590 0.50 +3.1
2,294,840 + fieF NIAGMN_11590 0.50 -0.1
2,294,840 + fieF NIAGMN_11590 0.50 -1.0
2,294,841 - fieF NIAGMN_11590 0.50 -0.4
2,294,841 - fieF NIAGMN_11590 0.50 +0.1
2,294,841 - fieF NIAGMN_11590 0.50 -1.2
2,294,841 - fieF NIAGMN_11590 0.50 +0.6
2,294,841 - fieF NIAGMN_11590 0.50 +0.1
2,294,841 - fieF NIAGMN_11590 0.50 +0.6
2,294,841 - fieF NIAGMN_11590 0.50 -0.7
2,294,841 - fieF NIAGMN_11590 0.50 +0.8
2,294,841 - fieF NIAGMN_11590 0.50 +0.4
2,294,841 - fieF NIAGMN_11590 0.50 -0.4
2,294,841 - fieF NIAGMN_11590 0.50 +0.5
2,294,841 - fieF NIAGMN_11590 0.50 +1.0
2,294,841 - fieF NIAGMN_11590 0.50 +2.2
2,294,841 - fieF NIAGMN_11590 0.50 -1.6
2,294,841 - fieF NIAGMN_11590 0.50 -0.1
2,294,841 - fieF NIAGMN_11590 0.50 -0.1
2,294,841 - fieF NIAGMN_11590 0.50 -0.4
2,294,845 + fieF NIAGMN_11590 0.50 +0.3
2,294,845 + fieF NIAGMN_11590 0.50 -0.6
2,294,846 - fieF NIAGMN_11590 0.50 -0.6
2,294,921 + fieF NIAGMN_11590 0.58 +0.3
2,294,979 - fieF NIAGMN_11590 0.65 -0.1
2,295,012 - fieF NIAGMN_11590 0.69 +0.3
2,295,012 - fieF NIAGMN_11590 0.69 +1.0
2,295,028 + fieF NIAGMN_11590 0.70 +0.8
2,295,034 + fieF NIAGMN_11590 0.71 +0.2
2,295,034 + fieF NIAGMN_11590 0.71 +1.3
2,295,034 + fieF NIAGMN_11590 0.71 -0.6
2,295,034 + fieF NIAGMN_11590 0.71 +0.2
2,295,034 + fieF NIAGMN_11590 0.71 -1.7
2,295,034 + fieF NIAGMN_11590 0.71 +0.4
2,295,035 - fieF NIAGMN_11590 0.71 +3.3
2,295,035 - fieF NIAGMN_11590 0.71 +0.7
2,295,035 - fieF NIAGMN_11590 0.71 +0.1
2,295,035 - fieF NIAGMN_11590 0.71 -0.1
2,295,035 - fieF NIAGMN_11590 0.71 -0.2
2,295,035 - fieF NIAGMN_11590 0.71 -0.0
2,295,035 - fieF NIAGMN_11590 0.71 +0.7
2,295,035 - fieF NIAGMN_11590 0.71 -0.0
2,295,198 + fieF NIAGMN_11590 0.89 -1.3
2,295,198 + fieF NIAGMN_11590 0.89 -0.0
2,295,198 + fieF NIAGMN_11590 0.89 -0.7
2,295,199 - fieF NIAGMN_11590 0.89 -0.1

Or see this region's nucleotide sequence