Strain Fitness in Escherichia coli ECRC102 around NIAGMN_11240

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcoaA and birA are separated by 28 nucleotidesbirA and murB overlap by 4 nucleotides NIAGMN_11235: coaA - type I pantothenate kinase, at 2,217,705 to 2,218,631 coaA NIAGMN_11240: birA - bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA, at 2,218,660 to 2,219,625 birA NIAGMN_11245: murB - UDP-N-acetylmuramate dehydrogenase, at 2,219,622 to 2,220,650 murB Position (kb) 2218 2219 2220Strain fitness (log2 ratio) -2 -1 0 1 2at 2217.660 kb on - strandat 2217.660 kb on - strandat 2217.660 kb on - strandat 2217.660 kb on - strandat 2217.660 kb on - strandat 2217.660 kb on - strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.680 kb on + strandat 2217.681 kb on - strandat 2217.681 kb on - strandat 2217.681 kb on - strandat 2217.681 kb on - strandat 2217.681 kb on - strandat 2217.681 kb on - strandat 2217.681 kb on - strandat 2217.681 kb on - strandat 2217.681 kb on - strandat 2217.686 kb on + strandat 2217.687 kb on - strandat 2217.688 kb on + strandat 2217.688 kb on + strandat 2217.688 kb on + strandat 2217.689 kb on - strandat 2217.689 kb on - strandat 2217.689 kb on - strandat 2217.689 kb on - strandat 2218.646 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,217,660 - +0.7
2,217,660 - -0.6
2,217,660 - -0.5
2,217,660 - -1.0
2,217,660 - +2.7
2,217,660 - -0.7
2,217,680 + +0.2
2,217,680 + -0.3
2,217,680 + -0.5
2,217,680 + -0.5
2,217,680 + -0.7
2,217,680 + +0.5
2,217,680 + -0.6
2,217,680 + -0.3
2,217,680 + +0.6
2,217,680 + -1.0
2,217,680 + +0.2
2,217,680 + +0.0
2,217,680 + +1.4
2,217,680 + +0.5
2,217,680 + +0.3
2,217,681 - -0.5
2,217,681 - -1.9
2,217,681 - -0.6
2,217,681 - -0.3
2,217,681 - -1.6
2,217,681 - +0.2
2,217,681 - -1.3
2,217,681 - -0.5
2,217,681 - +0.2
2,217,686 + -0.1
2,217,687 - -0.6
2,217,688 + +1.2
2,217,688 + +0.9
2,217,688 + -0.8
2,217,689 - +0.2
2,217,689 - +0.2
2,217,689 - -0.8
2,217,689 - +0.2
2,218,646 - +0.7

Or see this region's nucleotide sequence