Strain Fitness in Escherichia coli ECRC102 around NIAGMN_11170

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoC and rpoB_R687H are separated by 76 nucleotidesrpoB_R687H and rplL are separated by 319 nucleotidesrplL and rplJ are separated by 66 nucleotides NIAGMN_11165: rpoC - DNA-directed RNA polymerase subunit beta', at 2,203,255 to 2,207,478 rpoC NIAGMN_11170: rpoB_R687H - DNA-directed RNA polymerase subunit beta RpoB, at 2,207,555 to 2,211,583 _R687H NIAGMN_11180: rplL - 50S ribosomal protein L7/L12, at 2,211,903 to 2,212,268 rplL NIAGMN_11185: rplJ - 50S ribosomal protein L10, at 2,212,335 to 2,212,832 rplJ Position (kb) 2207 2208 2209 2210 2211 2212Strain fitness (log2 ratio) -1 0 1at 2207.500 kb on - strandat 2207.500 kb on - strandat 2211.704 kb on - strandat 2211.755 kb on - strandat 2211.755 kb on - strandat 2211.755 kb on - strandat 2211.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,207,500 - -0.1
2,207,500 - +0.6
2,211,704 - -0.8
2,211,755 - +0.2
2,211,755 - -0.1
2,211,755 - +0.2
2,211,755 - -1.2

Or see this region's nucleotide sequence