Strain Fitness in Escherichia coli ECRC102 around NIAGMN_10900

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjbH and NIAGMN_10900 overlap by 1 nucleotidesNIAGMN_10900 and NIAGMN_10905 overlap by 4 nucleotidesNIAGMN_10905 and yjbE are separated by 113 nucleotides NIAGMN_10895: yjbH - Uncharacterized lipoprotein YjbH, at 2,147,479 to 2,149,575 yjbH NIAGMN_10900: NIAGMN_10900 - Uncharacterized protein YjbG, at 2,149,575 to 2,150,312 _10900 NIAGMN_10905: NIAGMN_10905 - Lipoprotein yjbF, at 2,150,309 to 2,150,947 _10905 NIAGMN_10910: yjbE - Uncharacterized protein YjbE, at 2,151,061 to 2,151,303 yjbE Position (kb) 2149 2150 2151Strain fitness (log2 ratio) -2 -1 0 1 2at 2148.587 kb on + strand, within yjbHat 2148.587 kb on + strand, within yjbHat 2148.587 kb on + strand, within yjbHat 2148.587 kb on + strand, within yjbHat 2148.587 kb on + strand, within yjbHat 2148.587 kb on + strand, within yjbHat 2148.588 kb on - strand, within yjbHat 2148.588 kb on - strand, within yjbHat 2148.588 kb on - strand, within yjbHat 2148.588 kb on - strand, within yjbHat 2148.588 kb on - strand, within yjbHat 2148.652 kb on + strand, within yjbHat 2148.653 kb on - strand, within yjbHat 2148.732 kb on - strand, within yjbHat 2148.732 kb on - strand, within yjbHat 2148.732 kb on - strand, within yjbHat 2148.732 kb on - strand, within yjbHat 2148.732 kb on - strand, within yjbHat 2148.780 kb on + strand, within yjbHat 2148.800 kb on + strand, within yjbHat 2148.800 kb on + strand, within yjbHat 2148.800 kb on + strand, within yjbHat 2148.801 kb on - strand, within yjbHat 2148.801 kb on - strand, within yjbHat 2148.804 kb on + strand, within yjbHat 2148.804 kb on + strand, within yjbHat 2148.804 kb on + strand, within yjbHat 2148.804 kb on + strand, within yjbHat 2148.805 kb on - strand, within yjbHat 2148.805 kb on - strand, within yjbHat 2148.805 kb on - strand, within yjbHat 2148.805 kb on - strand, within yjbHat 2148.837 kb on - strand, within yjbHat 2148.859 kb on - strand, within yjbHat 2148.896 kb on + strand, within yjbHat 2148.897 kb on - strand, within yjbHat 2148.897 kb on - strand, within yjbHat 2148.897 kb on - strand, within yjbHat 2148.900 kb on + strand, within yjbHat 2148.900 kb on + strand, within yjbHat 2148.900 kb on + strand, within yjbHat 2148.901 kb on - strand, within yjbHat 2148.901 kb on - strand, within yjbHat 2148.901 kb on - strand, within yjbHat 2148.911 kb on + strand, within yjbHat 2148.912 kb on - strand, within yjbHat 2148.912 kb on - strand, within yjbHat 2148.950 kb on + strand, within yjbHat 2149.023 kb on - strand, within yjbHat 2149.023 kb on - strand, within yjbHat 2149.043 kb on + strand, within yjbHat 2149.043 kb on + strand, within yjbHat 2149.043 kb on + strand, within yjbHat 2149.043 kb on + strand, within yjbHat 2149.043 kb on + strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.044 kb on - strand, within yjbHat 2149.080 kb on + strand, within yjbHat 2149.158 kb on - strand, within yjbHat 2149.223 kb on + strand, within yjbHat 2149.224 kb on - strand, within yjbHat 2149.270 kb on - strand, within yjbHat 2149.271 kb on + strand, within yjbHat 2149.271 kb on + strand, within yjbHat 2149.271 kb on + strand, within yjbHat 2149.271 kb on + strand, within yjbHat 2149.272 kb on - strand, within yjbHat 2149.272 kb on - strand, within yjbHat 2149.272 kb on - strand, within yjbHat 2149.331 kb on + strand, within yjbHat 2149.380 kb on - strandat 2149.383 kb on - strandat 2149.456 kb on + strandat 2149.456 kb on + strandat 2149.456 kb on + strandat 2149.456 kb on + strandat 2149.456 kb on + strandat 2149.457 kb on - strandat 2149.460 kb on - strandat 2149.466 kb on - strandat 2149.466 kb on - strandat 2149.508 kb on + strandat 2149.508 kb on + strandat 2149.509 kb on - strandat 2149.509 kb on - strandat 2149.534 kb on - strandat 2149.534 kb on - strandat 2149.550 kb on - strandat 2149.550 kb on - strandat 2149.554 kb on + strandat 2149.554 kb on + strandat 2149.555 kb on - strandat 2149.667 kb on - strand, within NIAGMN_10900at 2149.667 kb on - strand, within NIAGMN_10900at 2149.667 kb on - strand, within NIAGMN_10900at 2149.670 kb on + strand, within NIAGMN_10900at 2149.670 kb on + strand, within NIAGMN_10900at 2149.670 kb on + strand, within NIAGMN_10900at 2149.670 kb on + strand, within NIAGMN_10900at 2149.670 kb on + strand, within NIAGMN_10900at 2149.671 kb on - strand, within NIAGMN_10900at 2149.671 kb on - strand, within NIAGMN_10900at 2149.671 kb on - strand, within NIAGMN_10900at 2149.671 kb on - strand, within NIAGMN_10900at 2149.671 kb on - strand, within NIAGMN_10900at 2149.671 kb on - strand, within NIAGMN_10900at 2149.692 kb on + strand, within NIAGMN_10900at 2149.692 kb on + strand, within NIAGMN_10900at 2149.711 kb on + strand, within NIAGMN_10900at 2149.762 kb on + strand, within NIAGMN_10900at 2149.762 kb on + strand, within NIAGMN_10900at 2149.763 kb on - strand, within NIAGMN_10900at 2149.766 kb on + strand, within NIAGMN_10900at 2149.767 kb on - strand, within NIAGMN_10900at 2149.767 kb on - strand, within NIAGMN_10900at 2149.767 kb on - strand, within NIAGMN_10900at 2149.805 kb on - strand, within NIAGMN_10900at 2149.805 kb on - strand, within NIAGMN_10900at 2149.805 kb on - strand, within NIAGMN_10900at 2149.856 kb on + strand, within NIAGMN_10900at 2149.906 kb on + strand, within NIAGMN_10900at 2149.907 kb on - strand, within NIAGMN_10900at 2150.184 kb on + strand, within NIAGMN_10900at 2150.185 kb on - strand, within NIAGMN_10900at 2150.297 kb on + strandat 2150.297 kb on + strandat 2150.297 kb on + strandat 2150.297 kb on + strandat 2150.297 kb on + strandat 2150.298 kb on - strandat 2150.307 kb on - strandat 2150.367 kb on + strandat 2150.609 kb on - strand, within NIAGMN_10905at 2150.609 kb on - strand, within NIAGMN_10905at 2150.609 kb on - strand, within NIAGMN_10905at 2150.780 kb on - strand, within NIAGMN_10905at 2150.780 kb on - strand, within NIAGMN_10905at 2150.790 kb on + strand, within NIAGMN_10905at 2150.790 kb on + strand, within NIAGMN_10905at 2150.790 kb on + strand, within NIAGMN_10905at 2150.791 kb on - strand, within NIAGMN_10905at 2150.791 kb on - strand, within NIAGMN_10905at 2150.791 kb on - strand, within NIAGMN_10905at 2150.791 kb on - strand, within NIAGMN_10905at 2150.791 kb on - strand, within NIAGMN_10905at 2150.809 kb on + strand, within NIAGMN_10905at 2150.809 kb on + strand, within NIAGMN_10905at 2150.810 kb on - strand, within NIAGMN_10905at 2150.819 kb on - strand, within NIAGMN_10905at 2150.837 kb on + strand, within NIAGMN_10905at 2150.837 kb on + strand, within NIAGMN_10905at 2150.838 kb on - strand, within NIAGMN_10905at 2150.887 kb on + strandat 2150.909 kb on + strandat 2150.909 kb on + strandat 2150.910 kb on - strandat 2150.912 kb on + strandat 2150.912 kb on + strandat 2150.923 kb on + strandat 2150.924 kb on - strandat 2150.997 kb on - strandat 2151.008 kb on + strandat 2151.008 kb on + strandat 2151.008 kb on + strandat 2151.008 kb on + strandat 2151.008 kb on + strandat 2151.009 kb on - strandat 2151.009 kb on - strandat 2151.050 kb on + strandat 2151.051 kb on - strandat 2151.051 kb on - strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.054 kb on + strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.055 kb on - strandat 2151.059 kb on + strandat 2151.059 kb on + strandat 2151.059 kb on + strandat 2151.059 kb on + strandat 2151.060 kb on - strandat 2151.060 kb on - strandat 2151.060 kb on - strandat 2151.060 kb on - strandat 2151.102 kb on + strand, within yjbEat 2151.102 kb on + strand, within yjbEat 2151.102 kb on + strand, within yjbEat 2151.102 kb on + strand, within yjbEat 2151.102 kb on + strand, within yjbEat 2151.102 kb on + strand, within yjbEat 2151.102 kb on + strand, within yjbEat 2151.103 kb on - strand, within yjbEat 2151.103 kb on - strand, within yjbEat 2151.103 kb on - strand, within yjbEat 2151.103 kb on - strand, within yjbEat 2151.154 kb on + strand, within yjbEat 2151.155 kb on - strand, within yjbEat 2151.155 kb on - strand, within yjbEat 2151.155 kb on - strand, within yjbEat 2151.272 kb on - strand, within yjbE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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2,148,587 + yjbH NIAGMN_10895 0.53 -1.8
2,148,587 + yjbH NIAGMN_10895 0.53 +0.8
2,148,587 + yjbH NIAGMN_10895 0.53 -0.3
2,148,587 + yjbH NIAGMN_10895 0.53 -0.7
2,148,587 + yjbH NIAGMN_10895 0.53 -0.6
2,148,587 + yjbH NIAGMN_10895 0.53 +0.0
2,148,588 - yjbH NIAGMN_10895 0.53 -0.9
2,148,588 - yjbH NIAGMN_10895 0.53 +0.1
2,148,588 - yjbH NIAGMN_10895 0.53 -0.0
2,148,588 - yjbH NIAGMN_10895 0.53 -0.5
2,148,588 - yjbH NIAGMN_10895 0.53 -0.2
2,148,652 + yjbH NIAGMN_10895 0.56 -0.0
2,148,653 - yjbH NIAGMN_10895 0.56 -0.4
2,148,732 - yjbH NIAGMN_10895 0.60 +0.1
2,148,732 - yjbH NIAGMN_10895 0.60 -0.8
2,148,732 - yjbH NIAGMN_10895 0.60 -0.2
2,148,732 - yjbH NIAGMN_10895 0.60 +0.0
2,148,732 - yjbH NIAGMN_10895 0.60 +0.2
2,148,780 + yjbH NIAGMN_10895 0.62 +1.7
2,148,800 + yjbH NIAGMN_10895 0.63 +0.2
2,148,800 + yjbH NIAGMN_10895 0.63 +1.1
2,148,800 + yjbH NIAGMN_10895 0.63 -0.3
2,148,801 - yjbH NIAGMN_10895 0.63 +1.1
2,148,801 - yjbH NIAGMN_10895 0.63 -1.6
2,148,804 + yjbH NIAGMN_10895 0.63 -1.1
2,148,804 + yjbH NIAGMN_10895 0.63 +1.0
2,148,804 + yjbH NIAGMN_10895 0.63 +0.1
2,148,804 + yjbH NIAGMN_10895 0.63 -0.1
2,148,805 - yjbH NIAGMN_10895 0.63 -1.0
2,148,805 - yjbH NIAGMN_10895 0.63 -0.4
2,148,805 - yjbH NIAGMN_10895 0.63 +0.5
2,148,805 - yjbH NIAGMN_10895 0.63 +2.7
2,148,837 - yjbH NIAGMN_10895 0.65 +1.7
2,148,859 - yjbH NIAGMN_10895 0.66 -0.6
2,148,896 + yjbH NIAGMN_10895 0.68 +0.7
2,148,897 - yjbH NIAGMN_10895 0.68 +0.3
2,148,897 - yjbH NIAGMN_10895 0.68 +0.2
2,148,897 - yjbH NIAGMN_10895 0.68 +0.1
2,148,900 + yjbH NIAGMN_10895 0.68 -0.5
2,148,900 + yjbH NIAGMN_10895 0.68 -0.1
2,148,900 + yjbH NIAGMN_10895 0.68 -0.1
2,148,901 - yjbH NIAGMN_10895 0.68 +0.2
2,148,901 - yjbH NIAGMN_10895 0.68 +0.4
2,148,901 - yjbH NIAGMN_10895 0.68 -0.9
2,148,911 + yjbH NIAGMN_10895 0.68 -0.3
2,148,912 - yjbH NIAGMN_10895 0.68 -0.6
2,148,912 - yjbH NIAGMN_10895 0.68 -0.8
2,148,950 + yjbH NIAGMN_10895 0.70 -0.0
2,149,023 - yjbH NIAGMN_10895 0.74 -0.4
2,149,023 - yjbH NIAGMN_10895 0.74 -1.4
2,149,043 + yjbH NIAGMN_10895 0.75 +1.0
2,149,043 + yjbH NIAGMN_10895 0.75 +0.1
2,149,043 + yjbH NIAGMN_10895 0.75 +0.7
2,149,043 + yjbH NIAGMN_10895 0.75 -0.9
2,149,043 + yjbH NIAGMN_10895 0.75 -0.4
2,149,044 - yjbH NIAGMN_10895 0.75 +0.3
2,149,044 - yjbH NIAGMN_10895 0.75 +0.2
2,149,044 - yjbH NIAGMN_10895 0.75 +1.4
2,149,044 - yjbH NIAGMN_10895 0.75 +0.0
2,149,044 - yjbH NIAGMN_10895 0.75 +0.5
2,149,044 - yjbH NIAGMN_10895 0.75 -0.7
2,149,044 - yjbH NIAGMN_10895 0.75 +1.5
2,149,044 - yjbH NIAGMN_10895 0.75 +0.4
2,149,044 - yjbH NIAGMN_10895 0.75 -0.5
2,149,044 - yjbH NIAGMN_10895 0.75 +1.1
2,149,080 + yjbH NIAGMN_10895 0.76 -0.1
2,149,158 - yjbH NIAGMN_10895 0.80 +1.7
2,149,223 + yjbH NIAGMN_10895 0.83 +1.3
2,149,224 - yjbH NIAGMN_10895 0.83 +2.0
2,149,270 - yjbH NIAGMN_10895 0.85 -0.3
2,149,271 + yjbH NIAGMN_10895 0.85 +1.2
2,149,271 + yjbH NIAGMN_10895 0.85 +0.1
2,149,271 + yjbH NIAGMN_10895 0.85 -0.6
2,149,271 + yjbH NIAGMN_10895 0.85 +0.1
2,149,272 - yjbH NIAGMN_10895 0.86 -1.1
2,149,272 - yjbH NIAGMN_10895 0.86 -0.0
2,149,272 - yjbH NIAGMN_10895 0.86 +0.5
2,149,331 + yjbH NIAGMN_10895 0.88 +0.5
2,149,380 - +0.1
2,149,383 - +0.8
2,149,456 + -0.7
2,149,456 + -2.0
2,149,456 + +0.2
2,149,456 + +0.4
2,149,456 + +0.9
2,149,457 - -0.2
2,149,460 - +0.1
2,149,466 - -2.1
2,149,466 - -0.3
2,149,508 + -0.0
2,149,508 + -0.8
2,149,509 - -1.4
2,149,509 - +0.0
2,149,534 - -0.0
2,149,534 - -0.6
2,149,550 - +0.2
2,149,550 - -0.0
2,149,554 + +0.4
2,149,554 + -0.2
2,149,555 - -1.0
2,149,667 - NIAGMN_10900 0.12 +0.3
2,149,667 - NIAGMN_10900 0.12 +1.7
2,149,667 - NIAGMN_10900 0.12 +0.9
2,149,670 + NIAGMN_10900 0.13 -1.1
2,149,670 + NIAGMN_10900 0.13 +0.3
2,149,670 + NIAGMN_10900 0.13 -0.5
2,149,670 + NIAGMN_10900 0.13 +0.7
2,149,670 + NIAGMN_10900 0.13 +0.3
2,149,671 - NIAGMN_10900 0.13 +0.4
2,149,671 - NIAGMN_10900 0.13 -0.3
2,149,671 - NIAGMN_10900 0.13 -0.2
2,149,671 - NIAGMN_10900 0.13 +0.1
2,149,671 - NIAGMN_10900 0.13 -0.5
2,149,671 - NIAGMN_10900 0.13 +0.7
2,149,692 + NIAGMN_10900 0.16 -0.0
2,149,692 + NIAGMN_10900 0.16 +0.1
2,149,711 + NIAGMN_10900 0.18 -0.9
2,149,762 + NIAGMN_10900 0.25 -0.0
2,149,762 + NIAGMN_10900 0.25 -0.3
2,149,763 - NIAGMN_10900 0.25 +0.1
2,149,766 + NIAGMN_10900 0.26 +0.3
2,149,767 - NIAGMN_10900 0.26 -0.2
2,149,767 - NIAGMN_10900 0.26 -1.6
2,149,767 - NIAGMN_10900 0.26 +0.4
2,149,805 - NIAGMN_10900 0.31 +0.1
2,149,805 - NIAGMN_10900 0.31 +0.4
2,149,805 - NIAGMN_10900 0.31 -0.1
2,149,856 + NIAGMN_10900 0.38 -0.4
2,149,906 + NIAGMN_10900 0.45 -0.1
2,149,907 - NIAGMN_10900 0.45 -0.7
2,150,184 + NIAGMN_10900 0.83 +0.7
2,150,185 - NIAGMN_10900 0.83 -0.1
2,150,297 + +0.0
2,150,297 + -0.7
2,150,297 + +0.6
2,150,297 + +0.9
2,150,297 + -0.1
2,150,298 - -0.2
2,150,307 - -0.5
2,150,367 + -0.3
2,150,609 - NIAGMN_10905 0.47 +0.3
2,150,609 - NIAGMN_10905 0.47 +1.0
2,150,609 - NIAGMN_10905 0.47 +1.9
2,150,780 - NIAGMN_10905 0.74 +0.7
2,150,780 - NIAGMN_10905 0.74 -0.2
2,150,790 + NIAGMN_10905 0.75 -0.0
2,150,790 + NIAGMN_10905 0.75 -0.7
2,150,790 + NIAGMN_10905 0.75 -0.6
2,150,791 - NIAGMN_10905 0.75 -0.3
2,150,791 - NIAGMN_10905 0.75 -0.4
2,150,791 - NIAGMN_10905 0.75 +2.1
2,150,791 - NIAGMN_10905 0.75 -0.5
2,150,791 - NIAGMN_10905 0.75 -0.0
2,150,809 + NIAGMN_10905 0.78 +0.3
2,150,809 + NIAGMN_10905 0.78 +0.2
2,150,810 - NIAGMN_10905 0.78 +0.7
2,150,819 - NIAGMN_10905 0.80 -0.7
2,150,837 + NIAGMN_10905 0.83 -1.5
2,150,837 + NIAGMN_10905 0.83 -0.6
2,150,838 - NIAGMN_10905 0.83 +1.9
2,150,887 + +0.4
2,150,909 + +0.4
2,150,909 + -0.3
2,150,910 - +0.5
2,150,912 + +0.1
2,150,912 + +0.7
2,150,923 + -0.2
2,150,924 - -0.7
2,150,997 - -0.1
2,151,008 + +0.1
2,151,008 + +0.3
2,151,008 + +0.0
2,151,008 + -0.1
2,151,008 + +1.0
2,151,009 - -0.2
2,151,009 - +1.7
2,151,050 + -0.3
2,151,051 - +0.7
2,151,051 - +0.0
2,151,054 + +0.5
2,151,054 + -1.2
2,151,054 + +1.7
2,151,054 + -0.9
2,151,054 + +0.1
2,151,054 + +1.0
2,151,054 + +0.1
2,151,054 + -0.5
2,151,054 + -0.1
2,151,054 + +0.1
2,151,054 + +0.1
2,151,054 + -0.1
2,151,055 - +0.6
2,151,055 - +0.2
2,151,055 - +0.1
2,151,055 - +0.2
2,151,055 - -1.9
2,151,055 - -0.3
2,151,055 - +0.3
2,151,055 - -0.0
2,151,055 - +0.1
2,151,055 - +0.0
2,151,055 - +0.0
2,151,055 - +1.2
2,151,055 - -1.1
2,151,055 - -0.3
2,151,059 + +0.0
2,151,059 + +1.1
2,151,059 + -0.4
2,151,059 + -2.0
2,151,060 - +0.4
2,151,060 - -1.7
2,151,060 - -1.0
2,151,060 - +0.1
2,151,102 + yjbE NIAGMN_10910 0.17 +1.0
2,151,102 + yjbE NIAGMN_10910 0.17 +0.7
2,151,102 + yjbE NIAGMN_10910 0.17 +0.5
2,151,102 + yjbE NIAGMN_10910 0.17 +1.5
2,151,102 + yjbE NIAGMN_10910 0.17 -1.2
2,151,102 + yjbE NIAGMN_10910 0.17 -2.2
2,151,102 + yjbE NIAGMN_10910 0.17 +0.1
2,151,103 - yjbE NIAGMN_10910 0.17 -0.4
2,151,103 - yjbE NIAGMN_10910 0.17 +0.6
2,151,103 - yjbE NIAGMN_10910 0.17 +0.1
2,151,103 - yjbE NIAGMN_10910 0.17 +0.4
2,151,154 + yjbE NIAGMN_10910 0.38 -0.3
2,151,155 - yjbE NIAGMN_10910 0.39 +1.6
2,151,155 - yjbE NIAGMN_10910 0.39 -0.3
2,151,155 - yjbE NIAGMN_10910 0.39 +2.4
2,151,272 - yjbE NIAGMN_10910 0.87 -0.2

Or see this region's nucleotide sequence