Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjfC and yjfM are separated by 2 nucleotides yjfM and yjfL are separated by 9 nucleotides yjfL and yjfK are separated by 17 nucleotides yjfK and yjfJ are separated by 50 nucleotides
NIAGMN_10035: yjfC - Putative acid--amine ligase YjfC, at 1,972,566 to 1,973,729
yjfC
NIAGMN_10040: yjfM - Uncharacterized protein YjfM, at 1,973,732 to 1,974,370
yjfM
NIAGMN_10045: yjfL - UPF0719 inner membrane protein YjfL, at 1,974,380 to 1,974,778
yjfL
NIAGMN_10050: yjfK - Uncharacterized protein YjfK, at 1,974,796 to 1,975,455
yjfK
NIAGMN_10055: yjfJ - Uncharacterized protein YjfJ, at 1,975,506 to 1,976,204
yjfJ
Position (kb) 1974
1975 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1973.381 kb on - strand, within yjfC at 1973.482 kb on + strand, within yjfC at 1973.483 kb on - strand, within yjfC at 1973.658 kb on - strand at 1973.658 kb on - strand at 1973.658 kb on - strand at 1973.772 kb on + strand at 1973.809 kb on + strand, within yjfM at 1973.826 kb on + strand, within yjfM at 1973.827 kb on - strand, within yjfM at 1973.863 kb on - strand, within yjfM at 1973.920 kb on + strand, within yjfM at 1973.921 kb on - strand, within yjfM at 1973.921 kb on - strand, within yjfM at 1973.922 kb on + strand, within yjfM at 1973.923 kb on - strand, within yjfM at 1973.948 kb on - strand, within yjfM at 1973.964 kb on - strand, within yjfM at 1974.012 kb on + strand, within yjfM at 1974.012 kb on + strand, within yjfM at 1974.012 kb on + strand, within yjfM at 1974.013 kb on - strand, within yjfM at 1974.013 kb on - strand, within yjfM at 1974.031 kb on + strand, within yjfM at 1974.031 kb on + strand, within yjfM at 1974.032 kb on - strand, within yjfM at 1974.032 kb on - strand, within yjfM at 1974.055 kb on + strand, within yjfM at 1974.055 kb on + strand, within yjfM at 1974.055 kb on + strand, within yjfM at 1974.055 kb on + strand, within yjfM at 1974.125 kb on - strand, within yjfM at 1974.160 kb on - strand, within yjfM at 1974.160 kb on - strand, within yjfM at 1974.160 kb on - strand, within yjfM at 1974.216 kb on - strand, within yjfM at 1974.251 kb on + strand, within yjfM at 1974.252 kb on - strand, within yjfM at 1974.252 kb on - strand, within yjfM at 1974.252 kb on - strand, within yjfM at 1974.256 kb on - strand, within yjfM at 1974.343 kb on + strand at 1974.490 kb on + strand, within yjfL at 1974.492 kb on + strand, within yjfL at 1974.898 kb on + strand, within yjfK at 1974.899 kb on - strand, within yjfK at 1974.918 kb on + strand, within yjfK at 1974.919 kb on - strand, within yjfK at 1975.007 kb on + strand, within yjfK at 1975.143 kb on - strand, within yjfK at 1975.143 kb on - strand, within yjfK at 1975.143 kb on - strand, within yjfK at 1975.143 kb on - strand, within yjfK at 1975.155 kb on - strand, within yjfK at 1975.170 kb on + strand, within yjfK at 1975.170 kb on + strand, within yjfK at 1975.171 kb on - strand, within yjfK at 1975.189 kb on - strand, within yjfK at 1975.238 kb on + strand, within yjfK at 1975.238 kb on + strand, within yjfK at 1975.239 kb on - strand, within yjfK at 1975.239 kb on - strand, within yjfK at 1975.239 kb on - strand, within yjfK at 1975.239 kb on - strand, within yjfK at 1975.241 kb on + strand, within yjfK at 1975.292 kb on - strand, within yjfK at 1975.297 kb on - strand, within yjfK at 1975.365 kb on + strand, within yjfK at 1975.416 kb on + strand at 1975.416 kb on + strand at 1975.416 kb on + strand at 1975.417 kb on - strand at 1975.417 kb on - strand at 1975.417 kb on - strand at 1975.455 kb on + strand at 1975.455 kb on + strand at 1975.455 kb on + strand at 1975.455 kb on + strand at 1975.455 kb on + strand at 1975.455 kb on + strand at 1975.471 kb on + strand at 1975.471 kb on + strand at 1975.471 kb on + strand at 1975.472 kb on - strand at 1975.536 kb on + strand at 1975.536 kb on + strand at 1975.536 kb on + strand at 1975.537 kb on - strand at 1975.537 kb on - strand at 1975.537 kb on - strand at 1975.537 kb on - strand at 1975.537 kb on - strand at 1975.537 kb on - strand at 1975.539 kb on + strand at 1975.539 kb on + strand at 1975.539 kb on + strand at 1975.539 kb on + strand at 1975.539 kb on + strand at 1975.539 kb on + strand at 1975.539 kb on + strand at 1975.539 kb on + strand at 1975.540 kb on - strand at 1975.540 kb on - strand at 1975.540 kb on - strand at 1975.540 kb on - strand at 1975.540 kb on - strand at 1975.540 kb on - strand at 1975.554 kb on - strand at 1975.559 kb on + strand at 1975.559 kb on + strand at 1975.559 kb on + strand at 1975.560 kb on - strand at 1975.560 kb on - strand at 1975.560 kb on - strand at 1975.626 kb on + strand, within yjfJ at 1975.627 kb on - strand, within yjfJ at 1975.687 kb on - strand, within yjfJ at 1975.730 kb on + strand, within yjfJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,973,381 - yjfC NIAGMN_10035 0.70 -0.4 1,973,482 + yjfC NIAGMN_10035 0.79 +1.7 1,973,483 - yjfC NIAGMN_10035 0.79 +2.2 1,973,658 - -0.7 1,973,658 - -1.8 1,973,658 - +1.9 1,973,772 + -0.2 1,973,809 + yjfM NIAGMN_10040 0.12 +1.1 1,973,826 + yjfM NIAGMN_10040 0.15 +0.1 1,973,827 - yjfM NIAGMN_10040 0.15 -1.3 1,973,863 - yjfM NIAGMN_10040 0.21 -0.4 1,973,920 + yjfM NIAGMN_10040 0.29 +0.5 1,973,921 - yjfM NIAGMN_10040 0.30 +0.8 1,973,921 - yjfM NIAGMN_10040 0.30 +0.4 1,973,922 + yjfM NIAGMN_10040 0.30 +3.3 1,973,923 - yjfM NIAGMN_10040 0.30 -1.1 1,973,948 - yjfM NIAGMN_10040 0.34 -0.1 1,973,964 - yjfM NIAGMN_10040 0.36 +0.1 1,974,012 + yjfM NIAGMN_10040 0.44 -0.1 1,974,012 + yjfM NIAGMN_10040 0.44 -0.2 1,974,012 + yjfM NIAGMN_10040 0.44 +0.7 1,974,013 - yjfM NIAGMN_10040 0.44 +1.2 1,974,013 - yjfM NIAGMN_10040 0.44 -0.1 1,974,031 + yjfM NIAGMN_10040 0.47 +0.2 1,974,031 + yjfM NIAGMN_10040 0.47 +0.1 1,974,032 - yjfM NIAGMN_10040 0.47 +0.5 1,974,032 - yjfM NIAGMN_10040 0.47 +1.7 1,974,055 + yjfM NIAGMN_10040 0.51 +1.5 1,974,055 + yjfM NIAGMN_10040 0.51 -1.3 1,974,055 + yjfM NIAGMN_10040 0.51 +1.1 1,974,055 + yjfM NIAGMN_10040 0.51 -1.8 1,974,125 - yjfM NIAGMN_10040 0.62 +2.2 1,974,160 - yjfM NIAGMN_10040 0.67 -0.3 1,974,160 - yjfM NIAGMN_10040 0.67 +0.4 1,974,160 - yjfM NIAGMN_10040 0.67 +0.5 1,974,216 - yjfM NIAGMN_10040 0.76 -0.1 1,974,251 + yjfM NIAGMN_10040 0.81 -1.1 1,974,252 - yjfM NIAGMN_10040 0.81 -1.3 1,974,252 - yjfM NIAGMN_10040 0.81 -0.1 1,974,252 - yjfM NIAGMN_10040 0.81 -0.1 1,974,256 - yjfM NIAGMN_10040 0.82 -0.9 1,974,343 + +0.4 1,974,490 + yjfL NIAGMN_10045 0.28 +0.3 1,974,492 + yjfL NIAGMN_10045 0.28 -1.4 1,974,898 + yjfK NIAGMN_10050 0.15 +0.4 1,974,899 - yjfK NIAGMN_10050 0.16 +1.1 1,974,918 + yjfK NIAGMN_10050 0.18 -2.0 1,974,919 - yjfK NIAGMN_10050 0.19 +1.7 1,975,007 + yjfK NIAGMN_10050 0.32 +0.1 1,975,143 - yjfK NIAGMN_10050 0.53 +0.5 1,975,143 - yjfK NIAGMN_10050 0.53 -1.1 1,975,143 - yjfK NIAGMN_10050 0.53 +0.4 1,975,143 - yjfK NIAGMN_10050 0.53 -0.2 1,975,155 - yjfK NIAGMN_10050 0.54 +0.5 1,975,170 + yjfK NIAGMN_10050 0.57 +0.9 1,975,170 + yjfK NIAGMN_10050 0.57 -0.1 1,975,171 - yjfK NIAGMN_10050 0.57 +0.1 1,975,189 - yjfK NIAGMN_10050 0.60 -0.3 1,975,238 + yjfK NIAGMN_10050 0.67 -0.8 1,975,238 + yjfK NIAGMN_10050 0.67 +0.7 1,975,239 - yjfK NIAGMN_10050 0.67 +0.4 1,975,239 - yjfK NIAGMN_10050 0.67 +0.1 1,975,239 - yjfK NIAGMN_10050 0.67 -0.0 1,975,239 - yjfK NIAGMN_10050 0.67 -1.1 1,975,241 + yjfK NIAGMN_10050 0.67 -0.4 1,975,292 - yjfK NIAGMN_10050 0.75 -0.4 1,975,297 - yjfK NIAGMN_10050 0.76 +0.1 1,975,365 + yjfK NIAGMN_10050 0.86 +0.4 1,975,416 + +0.9 1,975,416 + +0.9 1,975,416 + +0.4 1,975,417 - +0.7 1,975,417 - -1.0 1,975,417 - +0.1 1,975,455 + -1.5 1,975,455 + +0.9 1,975,455 + +0.6 1,975,455 + +0.3 1,975,455 + +0.8 1,975,455 + +1.4 1,975,471 + +0.5 1,975,471 + +0.1 1,975,471 + -0.9 1,975,472 - +1.7 1,975,536 + -0.3 1,975,536 + +0.2 1,975,536 + +0.9 1,975,537 - +0.5 1,975,537 - +0.8 1,975,537 - +0.4 1,975,537 - -1.9 1,975,537 - +0.1 1,975,537 - +0.5 1,975,539 + -1.3 1,975,539 + +1.0 1,975,539 + -0.7 1,975,539 + +0.0 1,975,539 + +1.3 1,975,539 + +0.4 1,975,539 + -0.8 1,975,539 + +0.7 1,975,540 - +0.5 1,975,540 - +0.1 1,975,540 - -0.2 1,975,540 - -0.8 1,975,540 - -0.1 1,975,540 - -0.1 1,975,554 - +0.2 1,975,559 + +1.4 1,975,559 + +0.8 1,975,559 + +0.5 1,975,560 - -0.5 1,975,560 - -0.2 1,975,560 - -0.4 1,975,626 + yjfJ NIAGMN_10055 0.17 +0.3 1,975,627 - yjfJ NIAGMN_10055 0.17 +0.3 1,975,687 - yjfJ NIAGMN_10055 0.26 +0.3 1,975,730 + yjfJ NIAGMN_10055 0.32 +0.3
Or see this region's nucleotide sequence