Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hypT and iraD overlap by 8 nucleotides iraD and idlP overlap by 4 nucleotides idlP and NIAGMN_09395 are separated by 237 nucleotides NIAGMN_09395 and yjiC are separated by 253 nucleotides
NIAGMN_09380: hypT - hypochlorite stress DNA-binding transcriptional regulator HypT, at 1,827,568 to 1,828,296
hypT
NIAGMN_09385: iraD - anti-adapter protein IraD, at 1,828,289 to 1,828,681
iraD
NIAGMN_09390: idlP - iraD leader peptide, at 1,828,678 to 1,828,761
idlP
NIAGMN_09395: NIAGMN_09395 - hypothetical protein, at 1,828,999 to 1,829,100
_09395
NIAGMN_09400: yjiC - Uncharacterized protein YjiC, at 1,829,354 to 1,830,184
yjiC
Position (kb) 1828
1829 Strain fitness (log2 ratio) -1
0
1 at 1827.732 kb on - strand, within hypT at 1827.891 kb on - strand, within hypT at 1827.998 kb on - strand, within hypT at 1828.043 kb on + strand, within hypT at 1828.132 kb on + strand, within hypT at 1828.211 kb on - strand, within hypT at 1828.290 kb on + strand at 1828.291 kb on - strand at 1828.372 kb on - strand, within iraD at 1828.372 kb on - strand, within iraD at 1828.379 kb on + strand, within iraD at 1828.379 kb on + strand, within iraD at 1828.380 kb on - strand, within iraD at 1828.380 kb on - strand, within iraD at 1828.411 kb on - strand, within iraD at 1828.411 kb on - strand, within iraD at 1828.460 kb on + strand, within iraD at 1828.460 kb on + strand, within iraD at 1828.461 kb on - strand, within iraD at 1828.553 kb on + strand, within iraD at 1828.553 kb on + strand, within iraD at 1828.554 kb on - strand, within iraD at 1828.554 kb on - strand, within iraD at 1828.554 kb on - strand, within iraD at 1828.554 kb on - strand, within iraD at 1828.583 kb on - strand, within iraD at 1828.583 kb on - strand, within iraD at 1828.701 kb on + strand, within idlP at 1828.701 kb on + strand, within idlP at 1828.709 kb on + strand, within idlP at 1828.709 kb on + strand, within idlP at 1828.709 kb on + strand, within idlP at 1828.710 kb on - strand, within idlP at 1828.710 kb on - strand, within idlP at 1828.710 kb on - strand, within idlP at 1828.742 kb on + strand, within idlP at 1828.743 kb on - strand, within idlP at 1828.743 kb on - strand, within idlP at 1828.783 kb on - strand at 1828.830 kb on - strand at 1828.830 kb on - strand at 1828.852 kb on - strand at 1828.922 kb on - strand at 1828.922 kb on - strand at 1828.946 kb on - strand at 1828.950 kb on - strand at 1828.950 kb on - strand at 1829.516 kb on - strand, within yjiC at 1829.557 kb on + strand, within yjiC at 1829.621 kb on - strand, within yjiC at 1829.636 kb on - strand, within yjiC at 1829.679 kb on + strand, within yjiC at 1829.680 kb on - strand, within yjiC at 1829.689 kb on + strand, within yjiC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,827,732 - hypT NIAGMN_09380 0.22 +0.0 1,827,891 - hypT NIAGMN_09380 0.44 +1.1 1,827,998 - hypT NIAGMN_09380 0.59 +1.3 1,828,043 + hypT NIAGMN_09380 0.65 -0.2 1,828,132 + hypT NIAGMN_09380 0.77 -0.1 1,828,211 - hypT NIAGMN_09380 0.88 -1.3 1,828,290 + -1.6 1,828,291 - -0.3 1,828,372 - iraD NIAGMN_09385 0.21 +1.1 1,828,372 - iraD NIAGMN_09385 0.21 -0.3 1,828,379 + iraD NIAGMN_09385 0.23 +0.2 1,828,379 + iraD NIAGMN_09385 0.23 +0.9 1,828,380 - iraD NIAGMN_09385 0.23 +0.4 1,828,380 - iraD NIAGMN_09385 0.23 +0.0 1,828,411 - iraD NIAGMN_09385 0.31 +1.1 1,828,411 - iraD NIAGMN_09385 0.31 -0.3 1,828,460 + iraD NIAGMN_09385 0.44 -0.6 1,828,460 + iraD NIAGMN_09385 0.44 -0.8 1,828,461 - iraD NIAGMN_09385 0.44 +0.3 1,828,553 + iraD NIAGMN_09385 0.67 +0.4 1,828,553 + iraD NIAGMN_09385 0.67 +0.9 1,828,554 - iraD NIAGMN_09385 0.67 -0.3 1,828,554 - iraD NIAGMN_09385 0.67 -0.0 1,828,554 - iraD NIAGMN_09385 0.67 +0.7 1,828,554 - iraD NIAGMN_09385 0.67 +0.2 1,828,583 - iraD NIAGMN_09385 0.75 +0.1 1,828,583 - iraD NIAGMN_09385 0.75 +0.7 1,828,701 + idlP NIAGMN_09390 0.27 -0.2 1,828,701 + idlP NIAGMN_09390 0.27 +1.7 1,828,709 + idlP NIAGMN_09390 0.37 -0.9 1,828,709 + idlP NIAGMN_09390 0.37 -0.1 1,828,709 + idlP NIAGMN_09390 0.37 +0.2 1,828,710 - idlP NIAGMN_09390 0.38 -1.2 1,828,710 - idlP NIAGMN_09390 0.38 -1.3 1,828,710 - idlP NIAGMN_09390 0.38 +0.0 1,828,742 + idlP NIAGMN_09390 0.76 +0.9 1,828,743 - idlP NIAGMN_09390 0.77 -1.0 1,828,743 - idlP NIAGMN_09390 0.77 +0.9 1,828,783 - -1.1 1,828,830 - -0.9 1,828,830 - -0.5 1,828,852 - -0.2 1,828,922 - +1.0 1,828,922 - +0.1 1,828,946 - -0.9 1,828,950 - +0.5 1,828,950 - +0.4 1,829,516 - yjiC NIAGMN_09400 0.19 -0.3 1,829,557 + yjiC NIAGMN_09400 0.24 +1.4 1,829,621 - yjiC NIAGMN_09400 0.32 +1.0 1,829,636 - yjiC NIAGMN_09400 0.34 +1.7 1,829,679 + yjiC NIAGMN_09400 0.39 +0.9 1,829,680 - yjiC NIAGMN_09400 0.39 -0.3 1,829,689 + yjiC NIAGMN_09400 0.40 +1.1
Or see this region's nucleotide sequence