Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_07145 and NIAGMN_07150 overlap by 47 nucleotides NIAGMN_07150 and NIAGMN_07155 are separated by 181 nucleotides NIAGMN_07155 and lutC are separated by 494 nucleotides
NIAGMN_07145: NIAGMN_07145 - Adhesin, at 1,372,524 to 1,373,618
_07145
NIAGMN_07150: NIAGMN_07150 - Autotransporter outer membrane beta-barrel domain-containing protein, at 1,373,572 to 1,373,784
_07150
NIAGMN_07155: NIAGMN_07155 - Uncharacterized protein YkgH, at 1,373,966 to 1,374,382
_07155
NIAGMN_07160: lutC - lactate utilization protein C, at 1,374,877 to 1,375,572
lutC
Position (kb)
1373
1374
1375 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1373.026 kb on + strand, within NIAGMN_07145 at 1373.178 kb on - strand, within NIAGMN_07145 at 1373.204 kb on + strand, within NIAGMN_07145 at 1373.401 kb on + strand, within NIAGMN_07145 at 1373.424 kb on + strand, within NIAGMN_07145 at 1373.435 kb on + strand, within NIAGMN_07145 at 1373.442 kb on + strand, within NIAGMN_07145 at 1373.443 kb on - strand, within NIAGMN_07145 at 1373.444 kb on + strand, within NIAGMN_07145 at 1373.475 kb on - strand, within NIAGMN_07145 at 1373.485 kb on + strand, within NIAGMN_07145 at 1373.485 kb on + strand, within NIAGMN_07145 at 1373.545 kb on + strand at 1373.546 kb on - strand at 1373.683 kb on - strand, within NIAGMN_07150 at 1373.704 kb on + strand, within NIAGMN_07150 at 1373.705 kb on - strand, within NIAGMN_07150 at 1373.705 kb on - strand, within NIAGMN_07150 at 1373.720 kb on - strand, within NIAGMN_07150 at 1373.759 kb on + strand, within NIAGMN_07150 at 1373.782 kb on + strand at 1373.816 kb on + strand at 1373.816 kb on + strand at 1373.818 kb on + strand at 1373.837 kb on + strand at 1373.838 kb on - strand at 1373.856 kb on - strand at 1373.860 kb on - strand at 1374.665 kb on + strand at 1374.766 kb on + strand at 1374.782 kb on - strand at 1374.782 kb on - strand at 1374.869 kb on + strand at 1374.869 kb on + strand at 1374.870 kb on - strand at 1374.981 kb on + strand, within lutC at 1374.982 kb on - strand, within lutC at 1374.984 kb on + strand, within lutC at 1374.984 kb on + strand, within lutC at 1374.985 kb on - strand, within lutC at 1375.167 kb on - strand, within lutC at 1375.167 kb on - strand, within lutC at 1375.167 kb on - strand, within lutC at 1375.176 kb on - strand, within lutC at 1375.348 kb on + strand, within lutC
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,373,026 + NIAGMN_07145 0.46 -1.1 1,373,178 - NIAGMN_07145 0.60 -0.6 1,373,204 + NIAGMN_07145 0.62 +0.5 1,373,401 + NIAGMN_07145 0.80 +0.8 1,373,424 + NIAGMN_07145 0.82 +0.9 1,373,435 + NIAGMN_07145 0.83 -0.4 1,373,442 + NIAGMN_07145 0.84 -0.2 1,373,443 - NIAGMN_07145 0.84 -1.1 1,373,444 + NIAGMN_07145 0.84 -0.1 1,373,475 - NIAGMN_07145 0.87 +2.5 1,373,485 + NIAGMN_07145 0.88 -1.2 1,373,485 + NIAGMN_07145 0.88 +0.3 1,373,545 + +0.2 1,373,546 - +3.8 1,373,683 - NIAGMN_07150 0.52 +1.5 1,373,704 + NIAGMN_07150 0.62 -0.1 1,373,705 - NIAGMN_07150 0.62 -0.5 1,373,705 - NIAGMN_07150 0.62 -0.5 1,373,720 - NIAGMN_07150 0.69 -0.8 1,373,759 + NIAGMN_07150 0.88 +0.4 1,373,782 + -0.4 1,373,816 + +0.1 1,373,816 + +0.5 1,373,818 + +0.1 1,373,837 + +0.4 1,373,838 - +0.5 1,373,856 - -0.7 1,373,860 - -0.5 1,374,665 + -0.1 1,374,766 + -0.5 1,374,782 - +0.3 1,374,782 - -0.1 1,374,869 + +0.3 1,374,869 + -0.1 1,374,870 - -0.5 1,374,981 + lutC NIAGMN_07160 0.15 -0.1 1,374,982 - lutC NIAGMN_07160 0.15 +0.2 1,374,984 + lutC NIAGMN_07160 0.15 -0.4 1,374,984 + lutC NIAGMN_07160 0.15 -0.1 1,374,985 - lutC NIAGMN_07160 0.16 +0.4 1,375,167 - lutC NIAGMN_07160 0.42 +0.5 1,375,167 - lutC NIAGMN_07160 0.42 +2.5 1,375,167 - lutC NIAGMN_07160 0.42 -0.1 1,375,176 - lutC NIAGMN_07160 0.43 +0.4 1,375,348 + lutC NIAGMN_07160 0.68 +3.1
Or see this region's nucleotide sequence