Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimZ and sfmF are separated by 2 nucleotides sfmF and fimH are separated by 10 nucleotides fimH and sfmD are separated by 12 nucleotides
NIAGMN_05830: fimZ - fimbria biosynthesis transcriptional regulator FimZ, at 1,084,101 to 1,084,733
fimZ
NIAGMN_05835: sfmF - fimbria assembly protein, at 1,084,736 to 1,085,251
sfmF
NIAGMN_05840: fimH - type 1 fimbria D-mannose specific adhesin FimH, at 1,085,262 to 1,086,269
fimH
NIAGMN_05845: sfmD - Outer membrane usher protein SfmD, at 1,086,282 to 1,088,891
sfmD
Position (kb) 1085
1086
1087 Strain fitness (log2 ratio) -1
0
1
2 at 1084.850 kb on + strand, within sfmF at 1084.900 kb on + strand, within sfmF at 1084.903 kb on + strand, within sfmF at 1084.907 kb on + strand, within sfmF at 1085.070 kb on - strand, within sfmF at 1085.170 kb on + strand, within sfmF at 1085.181 kb on - strand, within sfmF at 1085.181 kb on - strand, within sfmF at 1085.240 kb on + strand at 1085.336 kb on + strand at 1085.518 kb on - strand, within fimH at 1085.518 kb on - strand, within fimH at 1085.617 kb on - strand, within fimH at 1085.686 kb on - strand, within fimH at 1085.709 kb on - strand, within fimH at 1085.727 kb on - strand, within fimH at 1085.759 kb on - strand, within fimH at 1085.759 kb on - strand, within fimH at 1085.802 kb on - strand, within fimH at 1085.963 kb on - strand, within fimH at 1085.970 kb on + strand, within fimH at 1086.355 kb on + strand at 1086.355 kb on + strand at 1086.356 kb on - strand at 1086.433 kb on + strand at 1086.473 kb on + strand at 1086.606 kb on - strand, within sfmD at 1086.685 kb on + strand, within sfmD at 1086.745 kb on - strand, within sfmD at 1086.879 kb on - strand, within sfmD at 1086.901 kb on + strand, within sfmD at 1086.902 kb on - strand, within sfmD at 1086.938 kb on - strand, within sfmD at 1086.967 kb on - strand, within sfmD at 1086.973 kb on + strand, within sfmD at 1086.973 kb on + strand, within sfmD at 1087.008 kb on + strand, within sfmD at 1087.008 kb on + strand, within sfmD at 1087.009 kb on - strand, within sfmD at 1087.009 kb on - strand, within sfmD at 1087.148 kb on + strand, within sfmD at 1087.149 kb on - strand, within sfmD at 1087.248 kb on - strand, within sfmD at 1087.262 kb on + strand, within sfmD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,084,850 + sfmF NIAGMN_05835 0.22 +0.8 1,084,900 + sfmF NIAGMN_05835 0.32 +1.0 1,084,903 + sfmF NIAGMN_05835 0.32 +0.9 1,084,907 + sfmF NIAGMN_05835 0.33 -0.0 1,085,070 - sfmF NIAGMN_05835 0.65 -1.3 1,085,170 + sfmF NIAGMN_05835 0.84 -1.4 1,085,181 - sfmF NIAGMN_05835 0.86 -0.4 1,085,181 - sfmF NIAGMN_05835 0.86 +0.9 1,085,240 + -0.6 1,085,336 + -1.4 1,085,518 - fimH NIAGMN_05840 0.25 -0.1 1,085,518 - fimH NIAGMN_05840 0.25 +0.6 1,085,617 - fimH NIAGMN_05840 0.35 -0.0 1,085,686 - fimH NIAGMN_05840 0.42 +1.0 1,085,709 - fimH NIAGMN_05840 0.44 +0.0 1,085,727 - fimH NIAGMN_05840 0.46 +0.1 1,085,759 - fimH NIAGMN_05840 0.49 +1.0 1,085,759 - fimH NIAGMN_05840 0.49 +2.0 1,085,802 - fimH NIAGMN_05840 0.54 -0.4 1,085,963 - fimH NIAGMN_05840 0.70 -0.6 1,085,970 + fimH NIAGMN_05840 0.70 +0.4 1,086,355 + +0.1 1,086,355 + +0.7 1,086,356 - -0.1 1,086,433 + +0.2 1,086,473 + -0.1 1,086,606 - sfmD NIAGMN_05845 0.12 -0.9 1,086,685 + sfmD NIAGMN_05845 0.15 +1.1 1,086,745 - sfmD NIAGMN_05845 0.18 -0.1 1,086,879 - sfmD NIAGMN_05845 0.23 -1.1 1,086,901 + sfmD NIAGMN_05845 0.24 +0.7 1,086,902 - sfmD NIAGMN_05845 0.24 -0.1 1,086,938 - sfmD NIAGMN_05845 0.25 +0.1 1,086,967 - sfmD NIAGMN_05845 0.26 -0.3 1,086,973 + sfmD NIAGMN_05845 0.26 -0.2 1,086,973 + sfmD NIAGMN_05845 0.26 -0.1 1,087,008 + sfmD NIAGMN_05845 0.28 +0.4 1,087,008 + sfmD NIAGMN_05845 0.28 +0.4 1,087,009 - sfmD NIAGMN_05845 0.28 -1.1 1,087,009 - sfmD NIAGMN_05845 0.28 -1.1 1,087,148 + sfmD NIAGMN_05845 0.33 +0.9 1,087,149 - sfmD NIAGMN_05845 0.33 -0.1 1,087,248 - sfmD NIAGMN_05845 0.37 -0.9 1,087,262 + sfmD NIAGMN_05845 0.38 -1.1
Or see this region's nucleotide sequence