Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fepD and fepG overlap by 4 nucleotides fepG and fepC overlap by 4 nucleotides fepC and fepE overlap by 4 nucleotides
NIAGMN_05645: fepD - ferrienterobactin ABC transporter permease, at 1,037,195 to 1,038,199
fepD
NIAGMN_05650: fepG - iron-enterobactin ABC transporter permease, at 1,038,196 to 1,039,188
fepG
NIAGMN_05655: fepC - ferrienterobactin ABC transporter ATPase, at 1,039,185 to 1,040,000
fepC
NIAGMN_05660: fepE - LPS O-antigen length regulator, at 1,039,997 to 1,041,130
fepE
Position (kb) 1039
1040
1041 Strain fitness (log2 ratio) -1
0
1
2 at 1038.374 kb on + strand, within fepG at 1038.474 kb on - strand, within fepG at 1038.474 kb on - strand, within fepG at 1038.640 kb on - strand, within fepG at 1038.678 kb on + strand, within fepG at 1038.678 kb on + strand, within fepG at 1038.679 kb on - strand, within fepG at 1038.681 kb on + strand, within fepG at 1038.682 kb on - strand, within fepG at 1038.682 kb on - strand, within fepG at 1038.795 kb on + strand, within fepG at 1038.796 kb on - strand, within fepG at 1038.796 kb on - strand, within fepG at 1038.796 kb on - strand, within fepG at 1038.796 kb on - strand, within fepG at 1038.797 kb on + strand, within fepG at 1038.798 kb on - strand, within fepG at 1038.807 kb on - strand, within fepG at 1038.807 kb on - strand, within fepG at 1038.970 kb on - strand, within fepG at 1038.977 kb on + strand, within fepG at 1039.095 kb on + strand at 1039.096 kb on - strand at 1039.096 kb on - strand at 1039.143 kb on + strand at 1039.147 kb on + strand at 1039.148 kb on - strand at 1039.148 kb on - strand at 1039.148 kb on - strand at 1039.148 kb on - strand at 1039.148 kb on - strand at 1039.243 kb on - strand at 1039.319 kb on + strand, within fepC at 1039.319 kb on + strand, within fepC at 1039.319 kb on + strand, within fepC at 1039.342 kb on + strand, within fepC at 1039.404 kb on + strand, within fepC at 1039.469 kb on + strand, within fepC at 1039.469 kb on + strand, within fepC at 1039.582 kb on + strand, within fepC at 1039.582 kb on + strand, within fepC at 1039.676 kb on + strand, within fepC at 1039.676 kb on + strand, within fepC at 1039.677 kb on - strand, within fepC at 1039.767 kb on + strand, within fepC at 1039.767 kb on + strand, within fepC at 1039.796 kb on + strand, within fepC at 1039.905 kb on + strand, within fepC at 1039.905 kb on + strand, within fepC at 1039.905 kb on + strand, within fepC at 1039.998 kb on + strand at 1039.999 kb on - strand at 1040.004 kb on - strand at 1040.004 kb on - strand at 1040.058 kb on - strand at 1040.754 kb on + strand, within fepE
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 1,038,374 + fepG NIAGMN_05650 0.18 +0.1 1,038,474 - fepG NIAGMN_05650 0.28 -0.6 1,038,474 - fepG NIAGMN_05650 0.28 -0.1 1,038,640 - fepG NIAGMN_05650 0.45 -0.9 1,038,678 + fepG NIAGMN_05650 0.49 -0.1 1,038,678 + fepG NIAGMN_05650 0.49 +0.4 1,038,679 - fepG NIAGMN_05650 0.49 +1.4 1,038,681 + fepG NIAGMN_05650 0.49 +0.2 1,038,682 - fepG NIAGMN_05650 0.49 -0.1 1,038,682 - fepG NIAGMN_05650 0.49 +0.4 1,038,795 + fepG NIAGMN_05650 0.60 +0.7 1,038,796 - fepG NIAGMN_05650 0.60 +1.2 1,038,796 - fepG NIAGMN_05650 0.60 -0.6 1,038,796 - fepG NIAGMN_05650 0.60 +0.4 1,038,796 - fepG NIAGMN_05650 0.60 -0.6 1,038,797 + fepG NIAGMN_05650 0.61 +0.7 1,038,798 - fepG NIAGMN_05650 0.61 +0.1 1,038,807 - fepG NIAGMN_05650 0.62 +0.4 1,038,807 - fepG NIAGMN_05650 0.62 -0.9 1,038,970 - fepG NIAGMN_05650 0.78 +1.2 1,038,977 + fepG NIAGMN_05650 0.79 +0.4 1,039,095 + -0.3 1,039,096 - -0.6 1,039,096 - -0.4 1,039,143 + +1.0 1,039,147 + +0.3 1,039,148 - +0.9 1,039,148 - +1.2 1,039,148 - -0.1 1,039,148 - -1.6 1,039,148 - -0.9 1,039,243 - +2.1 1,039,319 + fepC NIAGMN_05655 0.16 +1.4 1,039,319 + fepC NIAGMN_05655 0.16 -0.1 1,039,319 + fepC NIAGMN_05655 0.16 -1.7 1,039,342 + fepC NIAGMN_05655 0.19 +0.1 1,039,404 + fepC NIAGMN_05655 0.27 -1.3 1,039,469 + fepC NIAGMN_05655 0.35 -0.0 1,039,469 + fepC NIAGMN_05655 0.35 +0.0 1,039,582 + fepC NIAGMN_05655 0.49 -0.7 1,039,582 + fepC NIAGMN_05655 0.49 +2.4 1,039,676 + fepC NIAGMN_05655 0.60 -0.7 1,039,676 + fepC NIAGMN_05655 0.60 +0.1 1,039,677 - fepC NIAGMN_05655 0.60 +1.9 1,039,767 + fepC NIAGMN_05655 0.71 +0.7 1,039,767 + fepC NIAGMN_05655 0.71 +0.8 1,039,796 + fepC NIAGMN_05655 0.75 +0.4 1,039,905 + fepC NIAGMN_05655 0.88 +0.4 1,039,905 + fepC NIAGMN_05655 0.88 -0.6 1,039,905 + fepC NIAGMN_05655 0.88 -0.7 1,039,998 + -0.1 1,039,999 - -1.1 1,040,004 - -0.6 1,040,004 - -0.1 1,040,058 - +2.0 1,040,754 + fepE NIAGMN_05660 0.67 -1.1
Or see this region's nucleotide sequence