Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nagA and nagC are separated by 8 nucleotides nagC and nagD are separated by 47 nucleotides
NIAGMN_05220: nagA - N-acetylglucosamine-6-phosphate deacetylase, at 958,266 to 959,414
nagA
NIAGMN_05225: nagC - DNA-binding transcriptional regulator NagC, at 959,423 to 960,643
nagC
NIAGMN_05230: nagD - ribonucleotide monophosphatase NagD, at 960,691 to 961,443
nagD
Position (kb) 959
960
961 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 958.541 kb on + strand, within nagA at 958.544 kb on + strand, within nagA at 958.544 kb on + strand, within nagA at 958.544 kb on + strand, within nagA at 958.548 kb on + strand, within nagA at 958.548 kb on + strand, within nagA at 958.562 kb on + strand, within nagA at 958.562 kb on + strand, within nagA at 958.712 kb on + strand, within nagA at 958.898 kb on + strand, within nagA at 958.917 kb on + strand, within nagA at 958.917 kb on + strand, within nagA at 958.932 kb on + strand, within nagA at 958.932 kb on + strand, within nagA at 958.932 kb on + strand, within nagA at 958.932 kb on + strand, within nagA at 958.934 kb on + strand, within nagA at 958.989 kb on + strand, within nagA at 958.989 kb on + strand, within nagA at 958.989 kb on + strand, within nagA at 959.000 kb on + strand, within nagA at 959.045 kb on + strand, within nagA at 959.046 kb on - strand, within nagA at 959.142 kb on + strand, within nagA at 959.142 kb on + strand, within nagA at 959.142 kb on + strand, within nagA at 959.142 kb on + strand, within nagA at 959.142 kb on + strand, within nagA at 959.142 kb on + strand, within nagA at 959.142 kb on + strand, within nagA at 959.142 kb on + strand, within nagA at 959.145 kb on + strand, within nagA at 959.145 kb on + strand, within nagA at 959.219 kb on + strand, within nagA at 959.264 kb on + strand, within nagA at 959.330 kb on + strand at 959.330 kb on + strand at 959.335 kb on + strand at 959.404 kb on + strand at 959.412 kb on + strand at 959.422 kb on + strand at 959.422 kb on + strand at 959.422 kb on + strand at 959.448 kb on + strand at 959.449 kb on - strand at 959.449 kb on - strand at 959.449 kb on - strand at 959.452 kb on + strand at 959.452 kb on + strand at 959.452 kb on + strand at 959.452 kb on + strand at 959.452 kb on + strand at 959.452 kb on + strand at 959.453 kb on - strand at 959.453 kb on - strand at 959.476 kb on + strand at 959.492 kb on + strand at 959.590 kb on + strand, within nagC at 959.650 kb on + strand, within nagC at 959.656 kb on + strand, within nagC at 959.694 kb on + strand, within nagC at 959.840 kb on + strand, within nagC at 959.841 kb on - strand, within nagC at 959.921 kb on + strand, within nagC at 959.921 kb on + strand, within nagC at 959.921 kb on + strand, within nagC at 959.922 kb on - strand, within nagC at 959.932 kb on + strand, within nagC at 959.932 kb on + strand, within nagC at 959.933 kb on - strand, within nagC at 959.958 kb on + strand, within nagC at 960.013 kb on + strand, within nagC at 960.035 kb on + strand, within nagC at 960.035 kb on + strand, within nagC at 960.035 kb on + strand, within nagC at 960.106 kb on + strand, within nagC at 960.163 kb on + strand, within nagC at 960.279 kb on - strand, within nagC at 960.409 kb on + strand, within nagC at 960.502 kb on + strand, within nagC at 960.502 kb on + strand, within nagC at 960.502 kb on + strand, within nagC at 960.502 kb on + strand, within nagC at 960.502 kb on + strand, within nagC at 960.543 kb on + strand at 960.614 kb on - strand at 960.652 kb on + strand at 960.653 kb on - strand at 960.665 kb on - strand at 960.677 kb on - strand at 960.820 kb on + strand, within nagD at 960.878 kb on + strand, within nagD at 960.896 kb on - strand, within nagD at 960.896 kb on - strand, within nagD at 960.897 kb on + strand, within nagD at 960.898 kb on - strand, within nagD at 960.952 kb on + strand, within nagD at 960.952 kb on + strand, within nagD at 960.952 kb on + strand, within nagD at 960.953 kb on - strand, within nagD at 960.953 kb on - strand, within nagD at 960.988 kb on + strand, within nagD at 960.988 kb on + strand, within nagD at 960.988 kb on + strand, within nagD at 960.989 kb on - strand, within nagD at 960.989 kb on - strand, within nagD at 960.989 kb on - strand, within nagD at 960.989 kb on - strand, within nagD at 961.054 kb on + strand, within nagD at 961.054 kb on + strand, within nagD at 961.054 kb on + strand, within nagD at 961.054 kb on + strand, within nagD at 961.055 kb on - strand, within nagD at 961.055 kb on - strand, within nagD at 961.074 kb on + strand, within nagD at 961.085 kb on - strand, within nagD at 961.111 kb on - strand, within nagD at 961.207 kb on + strand, within nagD at 961.207 kb on + strand, within nagD at 961.207 kb on + strand, within nagD at 961.208 kb on - strand, within nagD at 961.208 kb on - strand, within nagD at 961.208 kb on - strand, within nagD at 961.208 kb on - strand, within nagD at 961.208 kb on - strand, within nagD at 961.215 kb on + strand, within nagD at 961.215 kb on + strand, within nagD at 961.247 kb on + strand, within nagD at 961.308 kb on + strand, within nagD at 961.386 kb on + strand at 961.386 kb on + strand at 961.386 kb on + strand at 961.411 kb on + strand at 961.437 kb on + strand at 961.437 kb on + strand at 961.445 kb on + strand at 961.491 kb on - strand at 961.589 kb on - strand at 961.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 958,541 + nagA NIAGMN_05220 0.24 +1.4 958,544 + nagA NIAGMN_05220 0.24 +0.9 958,544 + nagA NIAGMN_05220 0.24 +1.4 958,544 + nagA NIAGMN_05220 0.24 +2.0 958,548 + nagA NIAGMN_05220 0.25 +0.4 958,548 + nagA NIAGMN_05220 0.25 -0.8 958,562 + nagA NIAGMN_05220 0.26 +1.4 958,562 + nagA NIAGMN_05220 0.26 +0.3 958,712 + nagA NIAGMN_05220 0.39 +1.0 958,898 + nagA NIAGMN_05220 0.55 -1.2 958,917 + nagA NIAGMN_05220 0.57 +0.1 958,917 + nagA NIAGMN_05220 0.57 +1.4 958,932 + nagA NIAGMN_05220 0.58 +0.4 958,932 + nagA NIAGMN_05220 0.58 -1.3 958,932 + nagA NIAGMN_05220 0.58 +0.4 958,932 + nagA NIAGMN_05220 0.58 +0.4 958,934 + nagA NIAGMN_05220 0.58 +0.4 958,989 + nagA NIAGMN_05220 0.63 -0.3 958,989 + nagA NIAGMN_05220 0.63 -0.6 958,989 + nagA NIAGMN_05220 0.63 +0.4 959,000 + nagA NIAGMN_05220 0.64 +0.8 959,045 + nagA NIAGMN_05220 0.68 +0.4 959,046 - nagA NIAGMN_05220 0.68 +0.4 959,142 + nagA NIAGMN_05220 0.76 +1.0 959,142 + nagA NIAGMN_05220 0.76 +0.0 959,142 + nagA NIAGMN_05220 0.76 +0.4 959,142 + nagA NIAGMN_05220 0.76 +0.7 959,142 + nagA NIAGMN_05220 0.76 +1.0 959,142 + nagA NIAGMN_05220 0.76 +0.7 959,142 + nagA NIAGMN_05220 0.76 +1.0 959,142 + nagA NIAGMN_05220 0.76 -0.1 959,145 + nagA NIAGMN_05220 0.77 +1.4 959,145 + nagA NIAGMN_05220 0.77 +1.4 959,219 + nagA NIAGMN_05220 0.83 +1.4 959,264 + nagA NIAGMN_05220 0.87 +0.2 959,330 + -0.6 959,330 + +0.4 959,335 + +0.5 959,404 + +0.7 959,412 + +0.3 959,422 + -0.9 959,422 + +0.8 959,422 + +1.1 959,448 + -0.1 959,449 - +0.7 959,449 - -0.6 959,449 - +0.2 959,452 + -1.1 959,452 + +0.4 959,452 + -0.3 959,452 + +0.5 959,452 + +0.2 959,452 + -0.2 959,453 - +0.0 959,453 - +0.8 959,476 + -0.3 959,492 + +1.1 959,590 + nagC NIAGMN_05225 0.14 -1.2 959,650 + nagC NIAGMN_05225 0.19 +0.9 959,656 + nagC NIAGMN_05225 0.19 -1.6 959,694 + nagC NIAGMN_05225 0.22 -2.3 959,840 + nagC NIAGMN_05225 0.34 +0.7 959,841 - nagC NIAGMN_05225 0.34 +1.4 959,921 + nagC NIAGMN_05225 0.41 -0.5 959,921 + nagC NIAGMN_05225 0.41 -0.1 959,921 + nagC NIAGMN_05225 0.41 +0.4 959,922 - nagC NIAGMN_05225 0.41 +0.8 959,932 + nagC NIAGMN_05225 0.42 +0.4 959,932 + nagC NIAGMN_05225 0.42 -0.9 959,933 - nagC NIAGMN_05225 0.42 +0.1 959,958 + nagC NIAGMN_05225 0.44 +0.7 960,013 + nagC NIAGMN_05225 0.48 -0.2 960,035 + nagC NIAGMN_05225 0.50 +1.2 960,035 + nagC NIAGMN_05225 0.50 +0.3 960,035 + nagC NIAGMN_05225 0.50 -0.4 960,106 + nagC NIAGMN_05225 0.56 -0.8 960,163 + nagC NIAGMN_05225 0.61 +1.4 960,279 - nagC NIAGMN_05225 0.70 +0.4 960,409 + nagC NIAGMN_05225 0.81 -0.5 960,502 + nagC NIAGMN_05225 0.88 +0.4 960,502 + nagC NIAGMN_05225 0.88 +1.4 960,502 + nagC NIAGMN_05225 0.88 -0.2 960,502 + nagC NIAGMN_05225 0.88 +2.0 960,502 + nagC NIAGMN_05225 0.88 -0.3 960,543 + +0.3 960,614 - -0.2 960,652 + -0.5 960,653 - -0.6 960,665 - +0.1 960,677 - +0.2 960,820 + nagD NIAGMN_05230 0.17 -0.2 960,878 + nagD NIAGMN_05230 0.25 -0.6 960,896 - nagD NIAGMN_05230 0.27 +1.4 960,896 - nagD NIAGMN_05230 0.27 -0.3 960,897 + nagD NIAGMN_05230 0.27 +0.1 960,898 - nagD NIAGMN_05230 0.27 +0.1 960,952 + nagD NIAGMN_05230 0.35 -0.0 960,952 + nagD NIAGMN_05230 0.35 +0.2 960,952 + nagD NIAGMN_05230 0.35 -1.0 960,953 - nagD NIAGMN_05230 0.35 +1.2 960,953 - nagD NIAGMN_05230 0.35 +0.8 960,988 + nagD NIAGMN_05230 0.39 +2.0 960,988 + nagD NIAGMN_05230 0.39 -0.9 960,988 + nagD NIAGMN_05230 0.39 -0.2 960,989 - nagD NIAGMN_05230 0.40 +0.4 960,989 - nagD NIAGMN_05230 0.40 -0.6 960,989 - nagD NIAGMN_05230 0.40 +3.0 960,989 - nagD NIAGMN_05230 0.40 +0.7 961,054 + nagD NIAGMN_05230 0.48 -0.2 961,054 + nagD NIAGMN_05230 0.48 -0.5 961,054 + nagD NIAGMN_05230 0.48 -0.7 961,054 + nagD NIAGMN_05230 0.48 -0.4 961,055 - nagD NIAGMN_05230 0.48 -0.6 961,055 - nagD NIAGMN_05230 0.48 +0.3 961,074 + nagD NIAGMN_05230 0.51 +0.6 961,085 - nagD NIAGMN_05230 0.52 -0.7 961,111 - nagD NIAGMN_05230 0.56 +1.4 961,207 + nagD NIAGMN_05230 0.69 -0.4 961,207 + nagD NIAGMN_05230 0.69 -1.2 961,207 + nagD NIAGMN_05230 0.69 +1.0 961,208 - nagD NIAGMN_05230 0.69 +2.4 961,208 - nagD NIAGMN_05230 0.69 -0.0 961,208 - nagD NIAGMN_05230 0.69 -0.6 961,208 - nagD NIAGMN_05230 0.69 -0.6 961,208 - nagD NIAGMN_05230 0.69 +2.4 961,215 + nagD NIAGMN_05230 0.70 +0.6 961,215 + nagD NIAGMN_05230 0.70 +0.7 961,247 + nagD NIAGMN_05230 0.74 -0.2 961,308 + nagD NIAGMN_05230 0.82 -2.6 961,386 + +0.4 961,386 + -1.6 961,386 + +1.4 961,411 + -0.4 961,437 + -1.0 961,437 + -0.6 961,445 + +0.8 961,491 - -0.3 961,589 - +1.8 961,589 - -0.1
Or see this region's nucleotide sequence