Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pxpC and pxpB overlap by 7 nucleotides pxpB and ybgI are separated by 22 nucleotides ybgI and dtpD are separated by 270 nucleotides
NIAGMN_05055: pxpC - 5-oxoprolinase subunit PxpC, at 919,219 to 920,151
pxpC
NIAGMN_05060: pxpB - 5-oxoprolinase subunit PxpB, at 920,145 to 920,801
pxpB
NIAGMN_05065: ybgI - radiation resistance protein YbgI, at 920,824 to 921,567
ybgI
NIAGMN_05070: dtpD - dipeptide permease DtpD, at 921,838 to 923,319
dtpD
Position (kb) 920
921
922 Strain fitness (log2 ratio) -2
-1
0
1
2 at 919.903 kb on - strand, within pxpC at 920.032 kb on - strand, within pxpC at 920.032 kb on - strand, within pxpC at 920.042 kb on - strand, within pxpC at 920.121 kb on + strand at 920.122 kb on - strand at 920.122 kb on - strand at 920.123 kb on + strand at 920.123 kb on + strand at 920.123 kb on + strand at 920.124 kb on - strand at 920.124 kb on - strand at 920.124 kb on - strand at 920.124 kb on - strand at 920.124 kb on - strand at 920.124 kb on - strand at 920.124 kb on - strand at 920.151 kb on + strand at 920.196 kb on + strand at 920.196 kb on + strand at 920.197 kb on - strand at 920.197 kb on - strand at 920.199 kb on + strand at 920.200 kb on - strand at 920.200 kb on - strand at 920.200 kb on - strand at 920.200 kb on - strand at 920.243 kb on + strand, within pxpB at 920.364 kb on + strand, within pxpB at 920.364 kb on + strand, within pxpB at 920.365 kb on - strand, within pxpB at 920.365 kb on - strand, within pxpB at 920.390 kb on - strand, within pxpB at 920.428 kb on + strand, within pxpB at 920.428 kb on + strand, within pxpB at 920.429 kb on - strand, within pxpB at 920.429 kb on - strand, within pxpB at 920.541 kb on - strand, within pxpB at 920.776 kb on - strand at 920.847 kb on + strand at 920.848 kb on - strand at 920.902 kb on - strand, within ybgI at 920.902 kb on - strand, within ybgI at 920.997 kb on + strand, within ybgI at 921.034 kb on - strand, within ybgI at 921.112 kb on - strand, within ybgI at 921.112 kb on - strand, within ybgI at 921.244 kb on - strand, within ybgI at 921.297 kb on + strand, within ybgI at 921.297 kb on + strand, within ybgI at 921.298 kb on - strand, within ybgI at 921.583 kb on - strand at 921.595 kb on - strand at 921.595 kb on - strand at 921.595 kb on - strand at 921.595 kb on - strand at 921.595 kb on - strand at 921.595 kb on - strand at 921.595 kb on - strand at 921.595 kb on - strand at 921.607 kb on + strand at 921.608 kb on - strand at 921.608 kb on - strand at 921.650 kb on - strand at 921.650 kb on - strand at 921.650 kb on - strand at 921.650 kb on - strand at 921.653 kb on - strand at 921.714 kb on - strand at 921.804 kb on - strand at 921.804 kb on - strand at 921.806 kb on + strand at 921.871 kb on + strand at 921.956 kb on + strand at 921.956 kb on + strand at 921.962 kb on - strand at 921.986 kb on + strand at 921.986 kb on + strand at 922.012 kb on + strand, within dtpD at 922.012 kb on + strand, within dtpD at 922.012 kb on + strand, within dtpD at 922.013 kb on - strand, within dtpD at 922.013 kb on - strand, within dtpD at 922.013 kb on - strand, within dtpD at 922.147 kb on + strand, within dtpD at 922.222 kb on + strand, within dtpD at 922.267 kb on + strand, within dtpD at 922.267 kb on + strand, within dtpD at 922.267 kb on + strand, within dtpD at 922.267 kb on + strand, within dtpD at 922.267 kb on + strand, within dtpD at 922.267 kb on + strand, within dtpD at 922.268 kb on - strand, within dtpD at 922.291 kb on - strand, within dtpD at 922.302 kb on + strand, within dtpD at 922.302 kb on + strand, within dtpD at 922.302 kb on + strand, within dtpD at 922.330 kb on + strand, within dtpD at 922.330 kb on + strand, within dtpD at 922.330 kb on + strand, within dtpD at 922.369 kb on - strand, within dtpD at 922.394 kb on + strand, within dtpD at 922.419 kb on + strand, within dtpD at 922.523 kb on + strand, within dtpD at 922.523 kb on + strand, within dtpD at 922.549 kb on + strand, within dtpD at 922.549 kb on + strand, within dtpD at 922.549 kb on + strand, within dtpD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 919,903 - pxpC NIAGMN_05055 0.73 -2.3 920,032 - pxpC NIAGMN_05055 0.87 +2.4 920,032 - pxpC NIAGMN_05055 0.87 -1.6 920,042 - pxpC NIAGMN_05055 0.88 -0.6 920,121 + +0.8 920,122 - -0.9 920,122 - +0.1 920,123 + -0.2 920,123 + -0.1 920,123 + -1.0 920,124 - +1.2 920,124 - +0.7 920,124 - +0.4 920,124 - -0.9 920,124 - +0.8 920,124 - -0.3 920,124 - +0.1 920,151 + -0.9 920,196 + -0.5 920,196 + +1.4 920,197 - +0.2 920,197 - +0.1 920,199 + +0.4 920,200 - +0.9 920,200 - +0.8 920,200 - +1.3 920,200 - +0.5 920,243 + pxpB NIAGMN_05060 0.15 +1.4 920,364 + pxpB NIAGMN_05060 0.33 -0.6 920,364 + pxpB NIAGMN_05060 0.33 -0.5 920,365 - pxpB NIAGMN_05060 0.33 -0.9 920,365 - pxpB NIAGMN_05060 0.33 +1.7 920,390 - pxpB NIAGMN_05060 0.37 -0.5 920,428 + pxpB NIAGMN_05060 0.43 -0.8 920,428 + pxpB NIAGMN_05060 0.43 +0.3 920,429 - pxpB NIAGMN_05060 0.43 -0.7 920,429 - pxpB NIAGMN_05060 0.43 -0.5 920,541 - pxpB NIAGMN_05060 0.60 -0.2 920,776 - +0.1 920,847 + -0.2 920,848 - +0.7 920,902 - ybgI NIAGMN_05065 0.10 +0.9 920,902 - ybgI NIAGMN_05065 0.10 -0.8 920,997 + ybgI NIAGMN_05065 0.23 -0.6 921,034 - ybgI NIAGMN_05065 0.28 -0.0 921,112 - ybgI NIAGMN_05065 0.39 +2.4 921,112 - ybgI NIAGMN_05065 0.39 +0.2 921,244 - ybgI NIAGMN_05065 0.56 +1.1 921,297 + ybgI NIAGMN_05065 0.64 +0.2 921,297 + ybgI NIAGMN_05065 0.64 -0.5 921,298 - ybgI NIAGMN_05065 0.64 +1.1 921,583 - -0.1 921,595 - +0.4 921,595 - -0.0 921,595 - -0.3 921,595 - -2.0 921,595 - -0.1 921,595 - -0.6 921,595 - +1.4 921,595 - -1.3 921,607 + +2.4 921,608 - +0.2 921,608 - -1.0 921,650 - -0.7 921,650 - +0.2 921,650 - +0.3 921,650 - +0.4 921,653 - -0.9 921,714 - -0.5 921,804 - -0.0 921,804 - -0.1 921,806 + +0.4 921,871 + +1.4 921,956 + +0.5 921,956 + +1.4 921,962 - -0.2 921,986 + -1.6 921,986 + -0.4 922,012 + dtpD NIAGMN_05070 0.12 +0.4 922,012 + dtpD NIAGMN_05070 0.12 +1.0 922,012 + dtpD NIAGMN_05070 0.12 -0.8 922,013 - dtpD NIAGMN_05070 0.12 +1.4 922,013 - dtpD NIAGMN_05070 0.12 -0.8 922,013 - dtpD NIAGMN_05070 0.12 -1.6 922,147 + dtpD NIAGMN_05070 0.21 -0.0 922,222 + dtpD NIAGMN_05070 0.26 +0.6 922,267 + dtpD NIAGMN_05070 0.29 +0.4 922,267 + dtpD NIAGMN_05070 0.29 +0.7 922,267 + dtpD NIAGMN_05070 0.29 +0.1 922,267 + dtpD NIAGMN_05070 0.29 -0.5 922,267 + dtpD NIAGMN_05070 0.29 -0.7 922,267 + dtpD NIAGMN_05070 0.29 -0.2 922,268 - dtpD NIAGMN_05070 0.29 +0.1 922,291 - dtpD NIAGMN_05070 0.31 -0.6 922,302 + dtpD NIAGMN_05070 0.31 -0.4 922,302 + dtpD NIAGMN_05070 0.31 +0.3 922,302 + dtpD NIAGMN_05070 0.31 -0.2 922,330 + dtpD NIAGMN_05070 0.33 -1.4 922,330 + dtpD NIAGMN_05070 0.33 +0.1 922,330 + dtpD NIAGMN_05070 0.33 +1.4 922,369 - dtpD NIAGMN_05070 0.36 -0.5 922,394 + dtpD NIAGMN_05070 0.38 -0.8 922,419 + dtpD NIAGMN_05070 0.39 +2.0 922,523 + dtpD NIAGMN_05070 0.46 -0.6 922,523 + dtpD NIAGMN_05070 0.46 -0.8 922,549 + dtpD NIAGMN_05070 0.48 +0.4 922,549 + dtpD NIAGMN_05070 0.48 +0.1 922,549 + dtpD NIAGMN_05070 0.48 +0.4
Or see this region's nucleotide sequence