Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gltA and NIAGMN_05015 are separated by 386 nucleotides NIAGMN_05015 and NIAGMN_05020 are separated by 58 nucleotides
NIAGMN_05010: gltA - citrate synthase, at 909,927 to 911,210
gltA
NIAGMN_05015: NIAGMN_05015 - Fimbrial protein, at 911,597 to 912,163
_05015
NIAGMN_05020: NIAGMN_05020 - Fimbrial biogenesis outer membrane usher protein, at 912,222 to 914,384
_05020
Position (kb) 911
912
913 Strain fitness (log2 ratio) -2
-1
0
1 at 910.631 kb on + strand, within gltA at 910.632 kb on - strand, within gltA at 910.695 kb on - strand, within gltA at 910.880 kb on - strand, within gltA at 910.980 kb on + strand, within gltA at 911.027 kb on + strand, within gltA at 911.228 kb on + strand at 911.281 kb on - strand at 911.343 kb on + strand at 911.544 kb on + strand at 911.769 kb on + strand, within NIAGMN_05015 at 912.007 kb on + strand, within NIAGMN_05015 at 912.212 kb on + strand at 912.393 kb on - strand at 912.608 kb on + strand, within NIAGMN_05020 at 912.721 kb on - strand, within NIAGMN_05020 at 912.874 kb on - strand, within NIAGMN_05020 at 912.898 kb on + strand, within NIAGMN_05020 at 912.899 kb on - strand, within NIAGMN_05020 at 912.899 kb on - strand, within NIAGMN_05020 at 912.899 kb on - strand, within NIAGMN_05020 at 912.899 kb on - strand, within NIAGMN_05020 at 912.961 kb on - strand, within NIAGMN_05020 at 913.089 kb on + strand, within NIAGMN_05020 at 913.118 kb on + strand, within NIAGMN_05020 at 913.119 kb on - strand, within NIAGMN_05020 at 913.151 kb on + strand, within NIAGMN_05020 at 913.151 kb on + strand, within NIAGMN_05020
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 910,631 + gltA NIAGMN_05010 0.55 -1.2 910,632 - gltA NIAGMN_05010 0.55 +0.1 910,695 - gltA NIAGMN_05010 0.60 +0.5 910,880 - gltA NIAGMN_05010 0.74 -1.0 910,980 + gltA NIAGMN_05010 0.82 +0.1 911,027 + gltA NIAGMN_05010 0.86 +0.7 911,228 + +0.9 911,281 - +0.5 911,343 + +0.8 911,544 + -0.2 911,769 + NIAGMN_05015 0.30 +1.4 912,007 + NIAGMN_05015 0.72 -1.9 912,212 + -0.9 912,393 - -0.2 912,608 + NIAGMN_05020 0.18 -0.6 912,721 - NIAGMN_05020 0.23 -1.3 912,874 - NIAGMN_05020 0.30 +1.0 912,898 + NIAGMN_05020 0.31 -0.4 912,899 - NIAGMN_05020 0.31 +0.8 912,899 - NIAGMN_05020 0.31 +0.2 912,899 - NIAGMN_05020 0.31 -0.2 912,899 - NIAGMN_05020 0.31 +0.1 912,961 - NIAGMN_05020 0.34 +0.0 913,089 + NIAGMN_05020 0.40 -1.1 913,118 + NIAGMN_05020 0.41 +1.4 913,119 - NIAGMN_05020 0.41 -0.2 913,151 + NIAGMN_05020 0.43 -0.0 913,151 + NIAGMN_05020 0.43 +0.1
Or see this region's nucleotide sequence