Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tolB and tolA are separated by 132 nucleotides tolA and tolR are separated by 64 nucleotides tolR and tolQ are separated by 3 nucleotides
NIAGMN_04855: tolB - Tol-Pal system protein TolB, at 877,583 to 878,875
tolB
NIAGMN_04860: tolA - cell envelope integrity protein TolA, at 879,008 to 880,192
tolA
NIAGMN_04865: tolR - colicin uptake protein TolR, at 880,257 to 880,685
tolR
NIAGMN_04870: tolQ - Tol-Pal system protein TolQ, at 880,689 to 881,381
tolQ
Position (kb) 879
880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 878.061 kb on - strand, within tolB at 878.065 kb on - strand, within tolB at 878.193 kb on - strand, within tolB at 878.230 kb on - strand, within tolB at 878.230 kb on - strand, within tolB at 878.240 kb on - strand, within tolB at 878.308 kb on - strand, within tolB at 878.371 kb on - strand, within tolB at 878.449 kb on - strand, within tolB at 878.530 kb on - strand, within tolB at 878.541 kb on + strand, within tolB at 878.579 kb on + strand, within tolB at 878.580 kb on - strand, within tolB at 878.619 kb on - strand, within tolB at 878.879 kb on - strand at 878.879 kb on - strand at 878.888 kb on - strand at 878.934 kb on - strand at 878.949 kb on - strand at 879.010 kb on - strand at 879.049 kb on - strand at 879.049 kb on - strand at 879.051 kb on - strand at 879.155 kb on - strand, within tolA at 879.174 kb on - strand, within tolA at 879.224 kb on - strand, within tolA at 879.260 kb on - strand, within tolA at 879.296 kb on - strand, within tolA at 880.002 kb on + strand, within tolA at 880.080 kb on - strand at 880.222 kb on - strand at 880.258 kb on + strand at 880.259 kb on - strand at 880.259 kb on - strand at 880.259 kb on - strand at 880.259 kb on - strand at 880.262 kb on + strand at 880.263 kb on - strand at 880.306 kb on - strand, within tolR at 880.535 kb on + strand, within tolR at 880.965 kb on - strand, within tolQ at 880.966 kb on + strand, within tolQ at 881.186 kb on - strand, within tolQ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 878,061 - tolB NIAGMN_04855 0.37 -0.2 878,065 - tolB NIAGMN_04855 0.37 -0.2 878,193 - tolB NIAGMN_04855 0.47 -3.3 878,230 - tolB NIAGMN_04855 0.50 -2.5 878,230 - tolB NIAGMN_04855 0.50 +0.8 878,240 - tolB NIAGMN_04855 0.51 +0.4 878,308 - tolB NIAGMN_04855 0.56 -2.2 878,371 - tolB NIAGMN_04855 0.61 -2.7 878,449 - tolB NIAGMN_04855 0.67 -1.4 878,530 - tolB NIAGMN_04855 0.73 -0.9 878,541 + tolB NIAGMN_04855 0.74 -1.8 878,579 + tolB NIAGMN_04855 0.77 -2.1 878,580 - tolB NIAGMN_04855 0.77 -1.9 878,619 - tolB NIAGMN_04855 0.80 -1.4 878,879 - -1.6 878,879 - -1.4 878,888 - +0.6 878,934 - -0.0 878,949 - +1.4 879,010 - +0.1 879,049 - -0.2 879,049 - +0.4 879,051 - -1.8 879,155 - tolA NIAGMN_04860 0.12 +1.4 879,174 - tolA NIAGMN_04860 0.14 +1.4 879,224 - tolA NIAGMN_04860 0.18 -0.6 879,260 - tolA NIAGMN_04860 0.21 -0.6 879,296 - tolA NIAGMN_04860 0.24 +1.4 880,002 + tolA NIAGMN_04860 0.84 -0.2 880,080 - +0.4 880,222 - +0.7 880,258 + -0.2 880,259 - -0.2 880,259 - +0.5 880,259 - -0.6 880,259 - -0.6 880,262 + -0.9 880,263 - +0.4 880,306 - tolR NIAGMN_04865 0.11 -1.6 880,535 + tolR NIAGMN_04865 0.65 -0.6 880,965 - tolQ NIAGMN_04870 0.40 -1.4 880,966 + tolQ NIAGMN_04870 0.40 +0.4 881,186 - tolQ NIAGMN_04870 0.72 -0.6
Or see this region's nucleotide sequence