Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03915

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntamiD and ybjQ overlap by 4 nucleotidesybjQ and NIAGMN_03915 are separated by 210 nucleotidesNIAGMN_03915 and NIAGMN_03920 are separated by 274 nucleotides NIAGMN_03905: amiD - N-acetylmuramoyl-L-alanine amidase AmiD, at 704,185 to 705,015 amiD NIAGMN_03910: ybjQ - UPF0145 protein YbjQ, at 705,012 to 705,335 ybjQ NIAGMN_03915: NIAGMN_03915 - hypothetical protein, at 705,546 to 705,836 _03915 NIAGMN_03920: NIAGMN_03920 - hypothetical protein, at 706,111 to 707,352 _03920 Position (kb) 705 706Strain fitness (log2 ratio) -1 0 1 2at 704.581 kb on - strand, within amiDat 704.802 kb on - strand, within amiDat 704.845 kb on - strand, within amiDat 704.845 kb on - strand, within amiDat 704.884 kb on - strand, within amiDat 704.884 kb on - strand, within amiDat 705.060 kb on - strand, within ybjQat 705.171 kb on - strand, within ybjQat 705.175 kb on - strand, within ybjQat 705.175 kb on - strand, within ybjQat 705.188 kb on - strand, within ybjQat 705.454 kb on - strandat 705.458 kb on - strandat 705.529 kb on - strandat 705.529 kb on - strandat 705.529 kb on - strandat 705.570 kb on - strandat 705.587 kb on + strand, within NIAGMN_03915at 706.417 kb on + strand, within NIAGMN_03920at 706.504 kb on + strand, within NIAGMN_03920at 706.573 kb on + strand, within NIAGMN_03920

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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704,581 - amiD NIAGMN_03905 0.48 +0.9
704,802 - amiD NIAGMN_03905 0.74 +0.9
704,845 - amiD NIAGMN_03905 0.79 +0.6
704,845 - amiD NIAGMN_03905 0.79 +0.0
704,884 - amiD NIAGMN_03905 0.84 +1.6
704,884 - amiD NIAGMN_03905 0.84 +0.9
705,060 - ybjQ NIAGMN_03910 0.15 +2.1
705,171 - ybjQ NIAGMN_03910 0.49 +0.9
705,175 - ybjQ NIAGMN_03910 0.50 +0.7
705,175 - ybjQ NIAGMN_03910 0.50 +0.3
705,188 - ybjQ NIAGMN_03910 0.54 -0.1
705,454 - -0.7
705,458 - +1.3
705,529 - +1.3
705,529 - +1.3
705,529 - -1.0
705,570 - -1.0
705,587 + NIAGMN_03915 0.14 -0.0
706,417 + NIAGMN_03920 0.25 +0.6
706,504 + NIAGMN_03920 0.32 +0.6
706,573 + NIAGMN_03920 0.37 -0.3

Or see this region's nucleotide sequence