Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_03465 and NIAGMN_03470 are separated by 593 nucleotides NIAGMN_03470 and NIAGMN_03475 are separated by 52 nucleotides NIAGMN_03475 and NIAGMN_03480 are separated by 95 nucleotides
NIAGMN_03465: NIAGMN_03465 - IS3 family transposase, at 621,709 to 622,596
_03465
NIAGMN_03470: NIAGMN_03470 - DUF4222 domain-containing protein, at 623,190 to 623,381
_03470
NIAGMN_03475: NIAGMN_03475 - Z1636-like protein, at 623,434 to 623,667
_03475
NIAGMN_03480: NIAGMN_03480 - DNA-binding protein, at 623,763 to 624,386
_03480
Position (kb) 623
624 Strain fitness (log2 ratio) -1
0
1 at 622.655 kb on - strand at 622.935 kb on + strand at 623.409 kb on - strand at 623.433 kb on - strand at 623.433 kb on - strand at 623.436 kb on - strand at 623.487 kb on - strand, within NIAGMN_03475 at 623.519 kb on - strand, within NIAGMN_03475 at 623.519 kb on - strand, within NIAGMN_03475 at 623.519 kb on - strand, within NIAGMN_03475 at 623.521 kb on - strand, within NIAGMN_03475 at 623.646 kb on + strand at 623.652 kb on - strand at 623.710 kb on - strand at 623.724 kb on - strand at 623.744 kb on - strand at 623.944 kb on + strand, within NIAGMN_03480 at 623.945 kb on - strand, within NIAGMN_03480 at 624.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 622,655 - +0.0 622,935 + +1.3 623,409 - +0.7 623,433 - -1.0 623,433 - +0.9 623,436 - +0.4 623,487 - NIAGMN_03475 0.23 -0.4 623,519 - NIAGMN_03475 0.36 -0.5 623,519 - NIAGMN_03475 0.36 -1.1 623,519 - NIAGMN_03475 0.36 +0.3 623,521 - NIAGMN_03475 0.37 -0.6 623,646 + -0.5 623,652 - -0.7 623,710 - -1.0 623,724 - -0.2 623,744 - +0.7 623,944 + NIAGMN_03480 0.29 +0.7 623,945 - NIAGMN_03480 0.29 -0.0 624,353 - -0.3
Or see this region's nucleotide sequence