Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03155

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycbJ and kdsB are separated by 153 nucleotideskdsB and ycaR overlap by 4 nucleotidesycaR and ycaQ are separated by 51 nucleotides NIAGMN_03150: ycbJ - Uncharacterized protein YcbJ, at 552,505 to 553,398 ycbJ NIAGMN_03155: kdsB - 3-deoxy-manno-octulosonate cytidylyltransferase, at 553,552 to 554,298 kdsB NIAGMN_03160: ycaR - protein YcaR, at 554,295 to 554,477 ycaR NIAGMN_03165: ycaQ - Uncharacterized protein YcaQ, at 554,529 to 555,761 ycaQ Position (kb) 553 554 555Strain fitness (log2 ratio) -1 0 1 2 3at 552.574 kb on - strandat 552.598 kb on + strand, within ycbJat 552.606 kb on - strand, within ycbJat 552.757 kb on + strand, within ycbJat 552.845 kb on - strand, within ycbJat 553.251 kb on + strand, within ycbJat 553.298 kb on + strand, within ycbJat 553.299 kb on - strand, within ycbJat 553.366 kb on + strandat 553.445 kb on - strandat 554.531 kb on - strandat 554.757 kb on + strand, within ycaQat 554.757 kb on + strand, within ycaQat 554.772 kb on + strand, within ycaQat 554.821 kb on + strand, within ycaQat 554.822 kb on - strand, within ycaQat 554.901 kb on + strand, within ycaQat 554.901 kb on + strand, within ycaQat 555.074 kb on - strand, within ycaQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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552,574 - +1.3
552,598 + ycbJ NIAGMN_03150 0.10 +0.3
552,606 - ycbJ NIAGMN_03150 0.11 +2.9
552,757 + ycbJ NIAGMN_03150 0.28 -0.6
552,845 - ycbJ NIAGMN_03150 0.38 +1.3
553,251 + ycbJ NIAGMN_03150 0.83 +1.0
553,298 + ycbJ NIAGMN_03150 0.89 +0.4
553,299 - ycbJ NIAGMN_03150 0.89 -0.6
553,366 + +0.6
553,445 - +0.3
554,531 - -0.8
554,757 + ycaQ NIAGMN_03165 0.18 -0.4
554,757 + ycaQ NIAGMN_03165 0.18 +2.3
554,772 + ycaQ NIAGMN_03165 0.20 -0.3
554,821 + ycaQ NIAGMN_03165 0.24 -0.0
554,822 - ycaQ NIAGMN_03165 0.24 +1.3
554,901 + ycaQ NIAGMN_03165 0.30 +0.7
554,901 + ycaQ NIAGMN_03165 0.30 +1.3
555,074 - ycaQ NIAGMN_03165 0.44 -0.0

Or see this region's nucleotide sequence