Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mukF and cmoM overlap by 4 nucleotides cmoM and elyC are separated by 135 nucleotides elyC and ycbJ overlap by 24 nucleotides
NIAGMN_03135: mukF - chromosome partition protein MukF, at 549,509 to 550,831
mukF
NIAGMN_03140: cmoM - tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM, at 550,828 to 551,613
cmoM
NIAGMN_03145: elyC - envelope biogenesis factor ElyC, at 551,749 to 552,528
elyC
NIAGMN_03150: ycbJ - Uncharacterized protein YcbJ, at 552,505 to 553,398
ycbJ
Position (kb) 550
551
552 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 550.873 kb on - strand at 550.873 kb on - strand at 550.875 kb on - strand at 550.875 kb on - strand at 550.875 kb on - strand at 550.891 kb on - strand at 550.893 kb on - strand at 551.008 kb on - strand, within cmoM at 551.064 kb on - strand, within cmoM at 551.140 kb on - strand, within cmoM at 551.530 kb on - strand, within cmoM at 551.530 kb on - strand, within cmoM at 551.562 kb on - strand at 551.635 kb on - strand at 551.659 kb on - strand at 551.659 kb on - strand at 551.698 kb on + strand at 551.721 kb on + strand at 551.721 kb on + strand at 551.721 kb on + strand at 551.721 kb on + strand at 551.721 kb on + strand at 551.721 kb on + strand at 551.722 kb on - strand at 551.722 kb on - strand at 551.722 kb on - strand at 551.781 kb on + strand at 551.781 kb on + strand at 551.810 kb on + strand at 551.956 kb on + strand, within elyC at 551.956 kb on + strand, within elyC at 551.989 kb on + strand, within elyC at 551.989 kb on + strand, within elyC at 551.989 kb on + strand, within elyC at 551.989 kb on + strand, within elyC at 552.057 kb on + strand, within elyC at 552.159 kb on + strand, within elyC at 552.159 kb on + strand, within elyC at 552.170 kb on + strand, within elyC at 552.170 kb on + strand, within elyC at 552.448 kb on - strand, within elyC at 552.574 kb on - strand at 552.598 kb on + strand, within ycbJ at 552.606 kb on - strand, within ycbJ
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 550,873 - +1.6 550,873 - +0.9 550,875 - +0.2 550,875 - +0.5 550,875 - +0.6 550,891 - -0.1 550,893 - +1.3 551,008 - cmoM NIAGMN_03140 0.23 -1.7 551,064 - cmoM NIAGMN_03140 0.30 -0.6 551,140 - cmoM NIAGMN_03140 0.40 +0.3 551,530 - cmoM NIAGMN_03140 0.89 -1.3 551,530 - cmoM NIAGMN_03140 0.89 -0.3 551,562 - +1.9 551,635 - -1.5 551,659 - +0.7 551,659 - -0.6 551,698 + +1.3 551,721 + +0.7 551,721 + -0.0 551,721 + -4.1 551,721 + +0.1 551,721 + -1.3 551,721 + +1.3 551,722 - -0.5 551,722 - +0.1 551,722 - +1.9 551,781 + +1.3 551,781 + +1.3 551,810 + +1.7 551,956 + elyC NIAGMN_03145 0.27 -0.5 551,956 + elyC NIAGMN_03145 0.27 -0.7 551,989 + elyC NIAGMN_03145 0.31 +2.3 551,989 + elyC NIAGMN_03145 0.31 +0.7 551,989 + elyC NIAGMN_03145 0.31 +0.5 551,989 + elyC NIAGMN_03145 0.31 +1.6 552,057 + elyC NIAGMN_03145 0.39 +1.8 552,159 + elyC NIAGMN_03145 0.53 -1.0 552,159 + elyC NIAGMN_03145 0.53 -0.0 552,170 + elyC NIAGMN_03145 0.54 +1.3 552,170 + elyC NIAGMN_03145 0.54 -1.2 552,448 - elyC NIAGMN_03145 0.90 +0.3 552,574 - +1.3 552,598 + ycbJ NIAGMN_03150 0.10 +0.3 552,606 - ycbJ NIAGMN_03150 0.11 +2.9
Or see this region's nucleotide sequence