Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ompF and aspC are separated by 184 nucleotides aspC and gloC are separated by 50 nucleotides gloC and ycbK are separated by 26 nucleotides
NIAGMN_03100: ompF - porin OmpF, at 538,339 to 539,427
ompF
NIAGMN_03105: aspC - aspartate transaminase, at 539,612 to 540,802
aspC
NIAGMN_03110: gloC - hydroxyacylglutathione hydrolase GloC, at 540,853 to 541,500
gloC
NIAGMN_03115: ycbK - Uncharacterized protein YcbK, at 541,527 to 542,075
ycbK
Position (kb) 539
540
541 Strain fitness (log2 ratio) -1
0
1
2
3 at 538.672 kb on + strand, within ompF at 538.708 kb on + strand, within ompF at 538.708 kb on + strand, within ompF at 538.735 kb on + strand, within ompF at 538.735 kb on + strand, within ompF at 538.735 kb on + strand, within ompF at 538.743 kb on + strand, within ompF at 538.767 kb on + strand, within ompF at 538.816 kb on - strand, within ompF at 538.824 kb on + strand, within ompF at 538.935 kb on + strand, within ompF at 538.935 kb on + strand, within ompF at 538.935 kb on + strand, within ompF at 538.936 kb on - strand, within ompF at 538.948 kb on + strand, within ompF at 538.975 kb on + strand, within ompF at 539.062 kb on + strand, within ompF at 539.080 kb on + strand, within ompF at 539.136 kb on + strand, within ompF at 539.191 kb on + strand, within ompF at 539.252 kb on + strand, within ompF at 539.285 kb on - strand, within ompF at 539.332 kb on + strand at 539.332 kb on + strand at 539.332 kb on + strand at 539.332 kb on + strand at 539.341 kb on + strand at 539.341 kb on + strand at 539.341 kb on + strand at 539.382 kb on - strand at 539.425 kb on + strand at 539.425 kb on + strand at 539.425 kb on + strand at 539.444 kb on + strand at 539.539 kb on + strand at 540.056 kb on + strand, within aspC at 540.316 kb on + strand, within aspC at 540.317 kb on - strand, within aspC at 540.800 kb on + strand at 540.844 kb on - strand at 540.889 kb on - strand at 540.889 kb on - strand at 540.889 kb on - strand at 540.937 kb on - strand, within gloC at 541.045 kb on - strand, within gloC at 541.104 kb on + strand, within gloC at 541.121 kb on - strand, within gloC at 541.121 kb on - strand, within gloC at 541.121 kb on - strand, within gloC at 541.130 kb on - strand, within gloC at 541.216 kb on - strand, within gloC at 541.494 kb on - strand at 541.500 kb on + strand at 541.526 kb on - strand at 541.526 kb on - strand at 541.529 kb on - strand at 541.529 kb on - strand at 541.557 kb on - strand at 541.557 kb on - strand at 541.569 kb on - strand at 541.569 kb on - strand at 541.569 kb on - strand at 541.580 kb on - strand at 541.588 kb on - strand, within ycbK at 541.604 kb on + strand, within ycbK at 541.605 kb on - strand, within ycbK at 541.609 kb on - strand, within ycbK at 541.609 kb on - strand, within ycbK
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 538,672 + ompF NIAGMN_03100 0.31 -0.1 538,708 + ompF NIAGMN_03100 0.34 +0.7 538,708 + ompF NIAGMN_03100 0.34 +0.7 538,735 + ompF NIAGMN_03100 0.36 +0.1 538,735 + ompF NIAGMN_03100 0.36 +0.7 538,735 + ompF NIAGMN_03100 0.36 -1.0 538,743 + ompF NIAGMN_03100 0.37 -0.0 538,767 + ompF NIAGMN_03100 0.39 +0.1 538,816 - ompF NIAGMN_03100 0.44 +0.4 538,824 + ompF NIAGMN_03100 0.45 -0.9 538,935 + ompF NIAGMN_03100 0.55 +0.4 538,935 + ompF NIAGMN_03100 0.55 -1.3 538,935 + ompF NIAGMN_03100 0.55 +0.3 538,936 - ompF NIAGMN_03100 0.55 +0.3 538,948 + ompF NIAGMN_03100 0.56 +0.7 538,975 + ompF NIAGMN_03100 0.58 +2.0 539,062 + ompF NIAGMN_03100 0.66 +1.3 539,080 + ompF NIAGMN_03100 0.68 -0.3 539,136 + ompF NIAGMN_03100 0.73 +0.0 539,191 + ompF NIAGMN_03100 0.78 +0.3 539,252 + ompF NIAGMN_03100 0.84 -0.3 539,285 - ompF NIAGMN_03100 0.87 -0.6 539,332 + +2.9 539,332 + +0.0 539,332 + +1.3 539,332 + +0.7 539,341 + -1.5 539,341 + -0.0 539,341 + +0.6 539,382 - -1.5 539,425 + +0.1 539,425 + -1.1 539,425 + +0.0 539,444 + -0.3 539,539 + +2.1 540,056 + aspC NIAGMN_03105 0.37 -0.4 540,316 + aspC NIAGMN_03105 0.59 +0.1 540,317 - aspC NIAGMN_03105 0.59 -1.1 540,800 + +0.3 540,844 - +0.3 540,889 - +1.0 540,889 - -1.0 540,889 - +0.3 540,937 - gloC NIAGMN_03110 0.13 +1.3 541,045 - gloC NIAGMN_03110 0.30 +1.3 541,104 + gloC NIAGMN_03110 0.39 +1.6 541,121 - gloC NIAGMN_03110 0.41 +1.1 541,121 - gloC NIAGMN_03110 0.41 -1.2 541,121 - gloC NIAGMN_03110 0.41 -0.7 541,130 - gloC NIAGMN_03110 0.43 +1.3 541,216 - gloC NIAGMN_03110 0.56 +0.3 541,494 - +1.3 541,500 + +0.3 541,526 - +0.1 541,526 - +0.0 541,529 - +0.3 541,529 - +2.0 541,557 - +2.3 541,557 - +0.7 541,569 - +1.1 541,569 - -0.2 541,569 - +0.6 541,580 - -0.6 541,588 - ycbK NIAGMN_03115 0.11 +0.3 541,604 + ycbK NIAGMN_03115 0.14 +0.6 541,605 - ycbK NIAGMN_03115 0.14 +0.7 541,609 - ycbK NIAGMN_03115 0.15 +0.7 541,609 - ycbK NIAGMN_03115 0.15 -0.2
Or see this region's nucleotide sequence