Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sulA and ompA are separated by 356 nucleotides ompA and matP are separated by 75 nucleotides matP and ycbZ are separated by 185 nucleotides
NIAGMN_02950: sulA - cell division inhibitor SulA, at 504,402 to 504,911
sulA
NIAGMN_02955: ompA - outer membrane protein A, at 505,268 to 506,308
ompA
NIAGMN_02960: matP - macrodomain Ter protein MatP, at 506,384 to 506,836
matP
NIAGMN_02965: ycbZ - Putative Lon protease-like protein, at 507,022 to 508,782
ycbZ
Position (kb) 505
506
507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 504.401 kb on + strand at 504.401 kb on + strand at 504.401 kb on + strand at 504.402 kb on - strand at 504.405 kb on + strand at 504.485 kb on + strand, within sulA at 504.547 kb on + strand, within sulA at 504.548 kb on - strand, within sulA at 504.721 kb on + strand, within sulA at 504.736 kb on - strand, within sulA at 504.736 kb on - strand, within sulA at 504.821 kb on + strand, within sulA at 504.830 kb on + strand, within sulA at 505.054 kb on + strand at 505.054 kb on + strand at 505.054 kb on + strand at 505.054 kb on + strand at 505.059 kb on + strand at 505.062 kb on - strand at 505.062 kb on - strand at 505.115 kb on + strand at 505.115 kb on + strand at 505.115 kb on + strand at 505.129 kb on + strand at 505.129 kb on + strand at 505.129 kb on + strand at 505.129 kb on + strand at 505.129 kb on + strand at 505.152 kb on + strand at 505.169 kb on + strand at 505.169 kb on + strand at 505.175 kb on + strand at 505.176 kb on - strand at 505.240 kb on + strand at 505.342 kb on + strand at 505.342 kb on + strand at 505.352 kb on + strand at 505.352 kb on + strand at 505.352 kb on + strand at 505.352 kb on + strand at 505.352 kb on + strand at 505.363 kb on + strand at 505.363 kb on + strand at 505.472 kb on + strand, within ompA at 505.472 kb on + strand, within ompA at 505.472 kb on + strand, within ompA at 505.472 kb on + strand, within ompA at 505.473 kb on - strand, within ompA at 505.473 kb on - strand, within ompA at 505.510 kb on + strand, within ompA at 505.510 kb on + strand, within ompA at 505.510 kb on + strand, within ompA at 505.510 kb on + strand, within ompA at 505.544 kb on + strand, within ompA at 505.544 kb on + strand, within ompA at 505.544 kb on + strand, within ompA at 505.544 kb on + strand, within ompA at 505.544 kb on + strand, within ompA at 505.544 kb on + strand, within ompA at 505.544 kb on + strand, within ompA at 505.573 kb on + strand, within ompA at 505.610 kb on + strand, within ompA at 505.610 kb on + strand, within ompA at 505.610 kb on + strand, within ompA at 505.610 kb on + strand, within ompA at 505.610 kb on + strand, within ompA at 505.610 kb on + strand, within ompA at 505.610 kb on + strand, within ompA at 505.610 kb on + strand, within ompA at 505.648 kb on + strand, within ompA at 505.666 kb on + strand, within ompA at 505.715 kb on + strand, within ompA at 505.896 kb on + strand, within ompA at 505.991 kb on + strand, within ompA at 506.031 kb on + strand, within ompA at 506.031 kb on + strand, within ompA at 506.045 kb on + strand, within ompA at 506.045 kb on + strand, within ompA at 506.072 kb on + strand, within ompA at 506.164 kb on + strand, within ompA at 506.185 kb on + strand, within ompA at 506.269 kb on + strand at 506.269 kb on + strand at 506.275 kb on + strand at 506.275 kb on + strand at 506.275 kb on + strand at 506.289 kb on + strand at 506.289 kb on + strand at 506.306 kb on + strand at 506.306 kb on + strand at 506.306 kb on + strand at 506.321 kb on + strand at 506.741 kb on + strand, within matP at 506.741 kb on + strand, within matP at 507.074 kb on - strand at 507.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 504,401 + +0.7 504,401 + +0.0 504,401 + +0.2 504,402 - +1.3 504,405 + +0.3 504,485 + sulA NIAGMN_02950 0.16 +1.0 504,547 + sulA NIAGMN_02950 0.28 -0.7 504,548 - sulA NIAGMN_02950 0.29 +0.3 504,721 + sulA NIAGMN_02950 0.63 -0.1 504,736 - sulA NIAGMN_02950 0.65 -0.1 504,736 - sulA NIAGMN_02950 0.65 +1.9 504,821 + sulA NIAGMN_02950 0.82 -2.0 504,830 + sulA NIAGMN_02950 0.84 +1.3 505,054 + -1.3 505,054 + +1.6 505,054 + -0.1 505,054 + +0.2 505,059 + -0.2 505,062 - +1.3 505,062 - +0.6 505,115 + -1.2 505,115 + -1.2 505,115 + -0.2 505,129 + -1.5 505,129 + -0.3 505,129 + -1.3 505,129 + +0.0 505,129 + -0.0 505,152 + -0.3 505,169 + -2.9 505,169 + -0.6 505,175 + -0.3 505,176 - -0.3 505,240 + +0.2 505,342 + -1.8 505,342 + -2.2 505,352 + -1.3 505,352 + -0.6 505,352 + -1.5 505,352 + +0.3 505,352 + -2.7 505,363 + -1.3 505,363 + -0.9 505,472 + ompA NIAGMN_02955 0.20 -0.3 505,472 + ompA NIAGMN_02955 0.20 +0.3 505,472 + ompA NIAGMN_02955 0.20 -0.7 505,472 + ompA NIAGMN_02955 0.20 +0.3 505,473 - ompA NIAGMN_02955 0.20 -0.7 505,473 - ompA NIAGMN_02955 0.20 -0.0 505,510 + ompA NIAGMN_02955 0.23 +1.3 505,510 + ompA NIAGMN_02955 0.23 -0.9 505,510 + ompA NIAGMN_02955 0.23 -1.3 505,510 + ompA NIAGMN_02955 0.23 -0.2 505,544 + ompA NIAGMN_02955 0.27 +1.3 505,544 + ompA NIAGMN_02955 0.27 -1.5 505,544 + ompA NIAGMN_02955 0.27 -0.9 505,544 + ompA NIAGMN_02955 0.27 -1.7 505,544 + ompA NIAGMN_02955 0.27 -0.8 505,544 + ompA NIAGMN_02955 0.27 -1.2 505,544 + ompA NIAGMN_02955 0.27 -0.5 505,573 + ompA NIAGMN_02955 0.29 -1.4 505,610 + ompA NIAGMN_02955 0.33 -1.3 505,610 + ompA NIAGMN_02955 0.33 -0.0 505,610 + ompA NIAGMN_02955 0.33 -1.9 505,610 + ompA NIAGMN_02955 0.33 +1.3 505,610 + ompA NIAGMN_02955 0.33 -1.0 505,610 + ompA NIAGMN_02955 0.33 -1.0 505,610 + ompA NIAGMN_02955 0.33 -1.0 505,610 + ompA NIAGMN_02955 0.33 -3.1 505,648 + ompA NIAGMN_02955 0.37 -0.9 505,666 + ompA NIAGMN_02955 0.38 +0.3 505,715 + ompA NIAGMN_02955 0.43 +0.3 505,896 + ompA NIAGMN_02955 0.60 -0.7 505,991 + ompA NIAGMN_02955 0.69 -1.2 506,031 + ompA NIAGMN_02955 0.73 -2.2 506,031 + ompA NIAGMN_02955 0.73 -0.7 506,045 + ompA NIAGMN_02955 0.75 -0.7 506,045 + ompA NIAGMN_02955 0.75 -1.0 506,072 + ompA NIAGMN_02955 0.77 -0.7 506,164 + ompA NIAGMN_02955 0.86 -1.7 506,185 + ompA NIAGMN_02955 0.88 +0.3 506,269 + -0.3 506,269 + +0.7 506,275 + -0.5 506,275 + +0.3 506,275 + +0.2 506,289 + +0.2 506,289 + +0.2 506,306 + -2.0 506,306 + -0.3 506,306 + +0.2 506,321 + +1.3 506,741 + matP NIAGMN_02960 0.79 +0.9 506,741 + matP NIAGMN_02960 0.79 +0.4 507,074 - +0.3 507,074 - +0.6
Or see this region's nucleotide sequence