Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_02090 and marR overlap by 4 nucleotides marR and NIAGMN_02100 overlap by 4 nucleotides NIAGMN_02100 and NIAGMN_02115 are separated by 322 nucleotides NIAGMN_02115 and NIAGMN_02120 are separated by 72 nucleotides NIAGMN_02120 and NIAGMN_02125 are separated by 6 nucleotides
NIAGMN_02090: NIAGMN_02090 - hypothetical protein, at 373,230 to 373,433
_02090
NIAGMN_02095: marR - MarR family transcriptional regulator, at 373,430 to 373,696
marR
NIAGMN_02100: NIAGMN_02100 - hypothetical protein, at 373,693 to 373,992
_02100
NIAGMN_02115: NIAGMN_02115 - derepression protein, at 374,315 to 374,545
_02115
NIAGMN_02120: NIAGMN_02120 - Phage protein, at 374,618 to 374,983
_02120
NIAGMN_02125: NIAGMN_02125 - replication protein, at 374,990 to 377,812
_02125
Position (kb) 374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 373.351 kb on - strand, within NIAGMN_02090 at 373.368 kb on + strand, within NIAGMN_02090 at 373.368 kb on + strand, within NIAGMN_02090 at 373.368 kb on + strand, within NIAGMN_02090 at 373.517 kb on - strand, within marR at 373.613 kb on + strand, within marR at 373.621 kb on - strand, within marR at 373.767 kb on - strand, within NIAGMN_02100 at 374.049 kb on + strand at 374.050 kb on - strand at 374.069 kb on + strand at 374.141 kb on + strand at 374.141 kb on + strand at 374.141 kb on + strand at 374.146 kb on + strand at 374.146 kb on + strand at 374.242 kb on + strand at 374.242 kb on + strand at 374.284 kb on + strand at 374.284 kb on + strand at 374.284 kb on + strand at 374.284 kb on + strand at 374.462 kb on + strand, within NIAGMN_02115 at 374.463 kb on - strand, within NIAGMN_02115 at 374.981 kb on + strand at 375.002 kb on + strand at 375.176 kb on - strand at 375.531 kb on + strand, within NIAGMN_02125
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 373,351 - NIAGMN_02090 0.59 -0.6 373,368 + NIAGMN_02090 0.68 -0.9 373,368 + NIAGMN_02090 0.68 -1.2 373,368 + NIAGMN_02090 0.68 -0.7 373,517 - marR NIAGMN_02095 0.33 -0.7 373,613 + marR NIAGMN_02095 0.69 -2.7 373,621 - marR NIAGMN_02095 0.72 -0.3 373,767 - NIAGMN_02100 0.25 +0.3 374,049 + +1.3 374,050 - +0.7 374,069 + -0.7 374,141 + -0.2 374,141 + -1.6 374,141 + -0.9 374,146 + -2.0 374,146 + -0.7 374,242 + -2.0 374,242 + -0.7 374,284 + -2.3 374,284 + +1.3 374,284 + +2.3 374,284 + +1.0 374,462 + NIAGMN_02115 0.64 -0.3 374,463 - NIAGMN_02115 0.64 -0.5 374,981 + -3.1 375,002 + -0.1 375,176 - +1.3 375,531 + NIAGMN_02125 0.19 -0.7
Or see this region's nucleotide sequence