Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_02070 and NIAGMN_02075 are separated by 11 nucleotides NIAGMN_02075 and NIAGMN_02080 overlap by 4 nucleotides NIAGMN_02080 and NIAGMN_02085 are separated by 92 nucleotides NIAGMN_02085 and NIAGMN_02090 are separated by 23 nucleotides NIAGMN_02090 and marR overlap by 4 nucleotides marR and NIAGMN_02100 overlap by 4 nucleotides NIAGMN_02100 and NIAGMN_02115 are separated by 322 nucleotides
NIAGMN_02070: NIAGMN_02070 - hypothetical protein, at 372,055 to 372,333
_02070
NIAGMN_02075: NIAGMN_02075 - DUF4754 domain-containing protein, at 372,345 to 372,587
_02075
NIAGMN_02080: NIAGMN_02080 - Membrane protein, at 372,584 to 372,697
_02080
NIAGMN_02085: NIAGMN_02085 - Phage protein, at 372,790 to 373,206
_02085
NIAGMN_02090: NIAGMN_02090 - hypothetical protein, at 373,230 to 373,433
_02090
NIAGMN_02095: marR - MarR family transcriptional regulator, at 373,430 to 373,696
marR
NIAGMN_02100: NIAGMN_02100 - hypothetical protein, at 373,693 to 373,992
_02100
NIAGMN_02115: NIAGMN_02115 - derepression protein, at 374,315 to 374,545
_02115
Position (kb) 373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 372.565 kb on - strand at 373.148 kb on + strand, within NIAGMN_02085 at 373.205 kb on - strand at 373.262 kb on + strand, within NIAGMN_02090 at 373.351 kb on - strand, within NIAGMN_02090 at 373.368 kb on + strand, within NIAGMN_02090 at 373.368 kb on + strand, within NIAGMN_02090 at 373.368 kb on + strand, within NIAGMN_02090 at 373.517 kb on - strand, within marR at 373.613 kb on + strand, within marR at 373.621 kb on - strand, within marR at 373.767 kb on - strand, within NIAGMN_02100 at 374.049 kb on + strand at 374.050 kb on - strand at 374.069 kb on + strand at 374.141 kb on + strand at 374.141 kb on + strand at 374.141 kb on + strand at 374.146 kb on + strand at 374.146 kb on + strand at 374.242 kb on + strand at 374.242 kb on + strand at 374.284 kb on + strand at 374.284 kb on + strand at 374.284 kb on + strand at 374.284 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 372,565 - -0.3 373,148 + NIAGMN_02085 0.86 +1.3 373,205 - -0.3 373,262 + NIAGMN_02090 0.16 -3.2 373,351 - NIAGMN_02090 0.59 -0.6 373,368 + NIAGMN_02090 0.68 -0.9 373,368 + NIAGMN_02090 0.68 -1.2 373,368 + NIAGMN_02090 0.68 -0.7 373,517 - marR NIAGMN_02095 0.33 -0.7 373,613 + marR NIAGMN_02095 0.69 -2.7 373,621 - marR NIAGMN_02095 0.72 -0.3 373,767 - NIAGMN_02100 0.25 +0.3 374,049 + +1.3 374,050 - +0.7 374,069 + -0.7 374,141 + -0.2 374,141 + -1.6 374,141 + -0.9 374,146 + -2.0 374,146 + -0.7 374,242 + -2.0 374,242 + -0.7 374,284 + -2.3 374,284 + +1.3 374,284 + +2.3 374,284 + +1.0
Or see this region's nucleotide sequence