Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02035

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttyrP and yecA are separated by 61 nucleotidesyecA and xerD are separated by 356 nucleotides NIAGMN_02030: tyrP - tyrosine transporter TyrP, at 366,415 to 367,626 tyrP NIAGMN_02035: yecA - UPF0149 family protein YecA, at 367,688 to 368,353 yecA NIAGMN_02040: xerD - integrase, at 368,710 to 369,717 xerD Position (kb) 367 368 369Strain fitness (log2 ratio) -1 0 1 2 3at 366.688 kb on + strand, within tyrPat 366.688 kb on + strand, within tyrPat 366.688 kb on + strand, within tyrPat 366.706 kb on + strand, within tyrPat 366.706 kb on + strand, within tyrPat 366.759 kb on + strand, within tyrPat 366.915 kb on + strand, within tyrPat 367.030 kb on + strand, within tyrPat 367.030 kb on + strand, within tyrPat 367.030 kb on + strand, within tyrPat 367.030 kb on + strand, within tyrPat 367.030 kb on + strand, within tyrPat 367.032 kb on + strand, within tyrPat 367.055 kb on + strand, within tyrPat 367.055 kb on + strand, within tyrPat 367.068 kb on + strand, within tyrPat 367.068 kb on + strand, within tyrPat 367.070 kb on + strand, within tyrPat 367.099 kb on + strand, within tyrPat 367.102 kb on - strand, within tyrPat 367.190 kb on + strand, within tyrPat 367.244 kb on + strand, within tyrPat 367.295 kb on + strand, within tyrPat 367.332 kb on + strand, within tyrPat 367.332 kb on + strand, within tyrPat 367.332 kb on + strand, within tyrPat 367.365 kb on + strand, within tyrPat 367.566 kb on + strandat 367.628 kb on + strandat 367.628 kb on + strandat 367.690 kb on - strandat 368.107 kb on + strand, within yecAat 368.108 kb on - strand, within yecAat 368.390 kb on - strandat 368.390 kb on - strandat 368.719 kb on - strandat 368.945 kb on + strand, within xerDat 369.194 kb on - strand, within xerDat 369.304 kb on + strand, within xerDat 369.305 kb on - strand, within xerDat 369.305 kb on - strand, within xerD

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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366,688 + tyrP NIAGMN_02030 0.23 +0.1
366,688 + tyrP NIAGMN_02030 0.23 +0.2
366,688 + tyrP NIAGMN_02030 0.23 -0.2
366,706 + tyrP NIAGMN_02030 0.24 -0.5
366,706 + tyrP NIAGMN_02030 0.24 +0.2
366,759 + tyrP NIAGMN_02030 0.28 +0.2
366,915 + tyrP NIAGMN_02030 0.41 -0.4
367,030 + tyrP NIAGMN_02030 0.51 +0.0
367,030 + tyrP NIAGMN_02030 0.51 -1.0
367,030 + tyrP NIAGMN_02030 0.51 +0.2
367,030 + tyrP NIAGMN_02030 0.51 +0.5
367,030 + tyrP NIAGMN_02030 0.51 -0.3
367,032 + tyrP NIAGMN_02030 0.51 +2.2
367,055 + tyrP NIAGMN_02030 0.53 +0.7
367,055 + tyrP NIAGMN_02030 0.53 -0.3
367,068 + tyrP NIAGMN_02030 0.54 +0.2
367,068 + tyrP NIAGMN_02030 0.54 +0.8
367,070 + tyrP NIAGMN_02030 0.54 +0.1
367,099 + tyrP NIAGMN_02030 0.56 -1.1
367,102 - tyrP NIAGMN_02030 0.57 -0.4
367,190 + tyrP NIAGMN_02030 0.64 +1.2
367,244 + tyrP NIAGMN_02030 0.68 +0.0
367,295 + tyrP NIAGMN_02030 0.73 +0.2
367,332 + tyrP NIAGMN_02030 0.76 +0.5
367,332 + tyrP NIAGMN_02030 0.76 +1.0
367,332 + tyrP NIAGMN_02030 0.76 +1.2
367,365 + tyrP NIAGMN_02030 0.78 -0.1
367,566 + -1.1
367,628 + -0.0
367,628 + +1.2
367,690 - +1.2
368,107 + yecA NIAGMN_02035 0.63 +1.2
368,108 - yecA NIAGMN_02035 0.63 -1.1
368,390 - +2.8
368,390 - +1.6
368,719 - +1.2
368,945 + xerD NIAGMN_02040 0.23 +0.2
369,194 - xerD NIAGMN_02040 0.48 +0.1
369,304 + xerD NIAGMN_02040 0.59 +0.3
369,305 - xerD NIAGMN_02040 0.59 -1.1
369,305 - xerD NIAGMN_02040 0.59 +1.4

Or see this region's nucleotide sequence