Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uspC and otsA are separated by 6 nucleotides otsA and otsB overlap by 26 nucleotides otsB and araH are separated by 166 nucleotides
NIAGMN_01965: uspC - universal stress protein UspC, at 356,487 to 356,915
uspC
NIAGMN_01970: otsA - alpha,alpha-trehalose-phosphate synthase, at 356,922 to 358,346
otsA
NIAGMN_01975: otsB - trehalose-phosphatase, at 358,321 to 359,121
otsB
NIAGMN_01980: araH - L-arabinose ABC transporter permease AraH, at 359,288 to 359,995
araH
Position (kb) 356
357
358
359 Strain fitness (log2 ratio) -2
-1
0
1
2 at 355.937 kb on - strand at 355.937 kb on - strand at 355.937 kb on - strand at 356.226 kb on - strand at 356.393 kb on + strand at 356.486 kb on + strand at 356.745 kb on + strand, within uspC at 356.787 kb on + strand, within uspC at 356.986 kb on - strand at 356.986 kb on - strand at 357.027 kb on - strand at 357.074 kb on + strand, within otsA at 357.235 kb on + strand, within otsA at 358.336 kb on - strand at 358.672 kb on - strand, within otsB at 358.674 kb on + strand, within otsB at 358.675 kb on - strand, within otsB at 358.685 kb on - strand, within otsB at 358.789 kb on - strand, within otsB at 358.804 kb on - strand, within otsB at 359.180 kb on + strand at 359.180 kb on + strand at 359.180 kb on + strand at 359.181 kb on - strand at 359.181 kb on - strand at 359.184 kb on + strand at 359.184 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 355,937 - +1.0 355,937 - -0.4 355,937 - +0.0 356,226 - +0.6 356,393 + -0.4 356,486 + -0.8 356,745 + uspC NIAGMN_01965 0.60 +0.0 356,787 + uspC NIAGMN_01965 0.70 +1.2 356,986 - +2.2 356,986 - +0.2 357,027 - -0.2 357,074 + otsA NIAGMN_01970 0.11 -0.8 357,235 + otsA NIAGMN_01970 0.22 -0.4 358,336 - +1.2 358,672 - otsB NIAGMN_01975 0.44 -0.4 358,674 + otsB NIAGMN_01975 0.44 +0.4 358,675 - otsB NIAGMN_01975 0.44 -0.6 358,685 - otsB NIAGMN_01975 0.45 -1.0 358,789 - otsB NIAGMN_01975 0.58 -0.8 358,804 - otsB NIAGMN_01975 0.60 -0.8 359,180 + +0.2 359,180 + +2.2 359,180 + +1.2 359,181 - +1.6 359,181 - -2.3 359,184 + -1.2 359,184 + -0.6
Or see this region's nucleotide sequence