Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01885

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargS and yecT are separated by 176 nucleotidesyecT and flhe are separated by 119 nucleotidesflhe and flhA overlap by 4 nucleotides NIAGMN_01875: argS - arginine--tRNA ligase, at 337,574 to 339,307 argS NIAGMN_01880: yecT - Uncharacterized protein YecT, at 339,484 to 339,972 yecT NIAGMN_01885: flhe - flagellar protein FlhE, at 340,092 to 340,487 flhe NIAGMN_01890: flhA - flagellar biosynthesis protein FlhA, at 340,484 to 342,562 flhA Position (kb) 340 341Strain fitness (log2 ratio) -1 0 1at 339.371 kb on - strandat 339.517 kb on - strandat 339.815 kb on + strand, within yecTat 339.845 kb on + strand, within yecTat 339.883 kb on - strand, within yecTat 339.883 kb on - strand, within yecTat 339.890 kb on + strand, within yecTat 340.353 kb on - strand, within flheat 340.410 kb on - strand, within flheat 340.470 kb on + strandat 341.332 kb on + strand, within flhAat 341.403 kb on - strand, within flhA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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339,371 - +1.2
339,517 - +0.1
339,815 + yecT NIAGMN_01880 0.68 +1.5
339,845 + yecT NIAGMN_01880 0.74 -0.3
339,883 - yecT NIAGMN_01880 0.82 +0.4
339,883 - yecT NIAGMN_01880 0.82 -1.1
339,890 + yecT NIAGMN_01880 0.83 -1.0
340,353 - flhe NIAGMN_01885 0.66 -1.4
340,410 - flhe NIAGMN_01885 0.80 +1.2
340,470 + +1.5
341,332 + flhA NIAGMN_01890 0.41 +0.2
341,403 - flhA NIAGMN_01890 0.44 -0.4

Or see this region's nucleotide sequence