Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01615

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyebS and yebT overlap by 32 nucleotidesyebT and rsmF overlap by 1 nucleotides NIAGMN_01610: yebS - membrane integrity lipid transport subunit YebS, at 293,670 to 294,953 yebS NIAGMN_01615: yebT - lipid-binding membrane homeostasis protein YebT, at 294,922 to 297,555 yebT NIAGMN_01620: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 297,555 to 299,075 rsmF Position (kb) 294 295 296 297 298Strain fitness (log2 ratio) -2 -1 0 1at 293.939 kb on + strand, within yebSat 293.975 kb on + strand, within yebSat 294.081 kb on + strand, within yebSat 294.085 kb on + strand, within yebSat 294.116 kb on - strand, within yebSat 294.197 kb on + strand, within yebSat 294.197 kb on + strand, within yebSat 294.198 kb on - strand, within yebSat 294.205 kb on + strand, within yebSat 294.213 kb on + strand, within yebSat 294.535 kb on - strand, within yebSat 294.561 kb on - strand, within yebSat 294.594 kb on - strand, within yebSat 294.673 kb on + strand, within yebSat 294.727 kb on + strand, within yebSat 295.045 kb on + strandat 295.081 kb on - strandat 295.095 kb on + strandat 295.095 kb on + strandat 295.096 kb on - strandat 295.312 kb on + strand, within yebTat 295.496 kb on - strand, within yebTat 296.363 kb on + strand, within yebTat 296.598 kb on + strand, within yebTat 296.631 kb on + strand, within yebTat 296.965 kb on + strand, within yebTat 297.164 kb on + strand, within yebTat 297.629 kb on + strandat 297.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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293,939 + yebS NIAGMN_01610 0.21 +1.2
293,975 + yebS NIAGMN_01610 0.24 -0.4
294,081 + yebS NIAGMN_01610 0.32 +0.3
294,085 + yebS NIAGMN_01610 0.32 -0.9
294,116 - yebS NIAGMN_01610 0.35 +1.6
294,197 + yebS NIAGMN_01610 0.41 -0.1
294,197 + yebS NIAGMN_01610 0.41 +0.2
294,198 - yebS NIAGMN_01610 0.41 -0.8
294,205 + yebS NIAGMN_01610 0.42 +0.2
294,213 + yebS NIAGMN_01610 0.42 +1.2
294,535 - yebS NIAGMN_01610 0.67 +0.2
294,561 - yebS NIAGMN_01610 0.69 +0.1
294,594 - yebS NIAGMN_01610 0.72 -2.0
294,673 + yebS NIAGMN_01610 0.78 -1.1
294,727 + yebS NIAGMN_01610 0.82 +0.2
295,045 + +0.6
295,081 - +0.5
295,095 + +1.2
295,095 + +1.2
295,096 - -1.8
295,312 + yebT NIAGMN_01615 0.15 -1.6
295,496 - yebT NIAGMN_01615 0.22 +0.1
296,363 + yebT NIAGMN_01615 0.55 -2.4
296,598 + yebT NIAGMN_01615 0.64 -1.1
296,631 + yebT NIAGMN_01615 0.65 +0.2
296,965 + yebT NIAGMN_01615 0.78 +0.2
297,164 + yebT NIAGMN_01615 0.85 +0.6
297,629 + -0.4
297,654 + -0.1

Or see this region's nucleotide sequence