Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01470

Experiment: Bas61

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrnd and fadD are separated by 81 nucleotidesfadD and yeaY are separated by 138 nucleotidesyeaY and tsaB are separated by 39 nucleotides NIAGMN_01460: rnd - ribonuclease D, at 264,275 to 265,390 rnd NIAGMN_01470: fadD - long-chain-fatty-acid--CoA ligase FadD, at 265,472 to 267,223 fadD NIAGMN_01475: yeaY - Slp family lipoprotein YeaY, at 267,362 to 267,943 yeaY NIAGMN_01480: tsaB - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 267,983 to 268,678 tsaB Position (kb) 265 266 267 268Strain fitness (log2 ratio) -2 -1 0 1 2 3at 264.481 kb on + strand, within rndat 264.652 kb on + strand, within rndat 265.115 kb on + strand, within rndat 265.467 kb on - strandat 265.512 kb on - strandat 266.209 kb on + strand, within fadDat 266.357 kb on - strand, within fadDat 266.438 kb on - strand, within fadDat 266.573 kb on - strand, within fadDat 266.649 kb on + strand, within fadDat 266.653 kb on + strand, within fadDat 266.807 kb on - strand, within fadDat 266.836 kb on - strand, within fadDat 267.250 kb on + strandat 267.451 kb on - strand, within yeaYat 267.793 kb on - strand, within yeaYat 267.793 kb on - strand, within yeaYat 267.793 kb on - strand, within yeaYat 267.793 kb on - strand, within yeaYat 267.891 kb on - strandat 267.902 kb on - strandat 267.902 kb on - strandat 267.972 kb on - strandat 267.978 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
remove
264,481 + rnd NIAGMN_01460 0.18 +0.3
264,652 + rnd NIAGMN_01460 0.34 +1.2
265,115 + rnd NIAGMN_01460 0.75 +2.8
265,467 - -0.2
265,512 - -2.1
266,209 + fadD NIAGMN_01470 0.42 -0.4
266,357 - fadD NIAGMN_01470 0.51 -1.1
266,438 - fadD NIAGMN_01470 0.55 +0.4
266,573 - fadD NIAGMN_01470 0.63 -1.4
266,649 + fadD NIAGMN_01470 0.67 -0.6
266,653 + fadD NIAGMN_01470 0.67 +1.1
266,807 - fadD NIAGMN_01470 0.76 -1.7
266,836 - fadD NIAGMN_01470 0.78 +0.6
267,250 + -0.6
267,451 - yeaY NIAGMN_01475 0.15 -1.7
267,793 - yeaY NIAGMN_01475 0.74 +0.4
267,793 - yeaY NIAGMN_01475 0.74 +0.4
267,793 - yeaY NIAGMN_01475 0.74 -1.0
267,793 - yeaY NIAGMN_01475 0.74 -1.4
267,891 - -0.4
267,902 - +2.2
267,902 - -0.4
267,972 - -0.1
267,978 - +0.6

Or see this region's nucleotide sequence