Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01305

Experiment: Bas61

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydjG and rbsK are separated by 9 nucleotidesrbsK and ydjI are separated by 4 nucleotidesydjI and ydjJ are separated by 20 nucleotides NIAGMN_01295: ydjG - NADH-dependent methylglyoxal reductase, at 232,190 to 233,170 ydjG NIAGMN_01300: rbsK - sugar kinase, at 233,180 to 234,112 rbsK NIAGMN_01305: ydjI - Uncharacterized protein YdjI, at 234,117 to 234,953 ydjI NIAGMN_01310: ydjJ - Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ, at 234,974 to 236,017 ydjJ Position (kb) 234 235Strain fitness (log2 ratio) -1 0 1 2at 233.252 kb on + strandat 233.253 kb on - strandat 233.316 kb on - strand, within rbsKat 233.316 kb on - strand, within rbsKat 233.567 kb on - strand, within rbsKat 233.834 kb on + strand, within rbsKat 234.499 kb on + strand, within ydjIat 235.481 kb on - strand, within ydjJat 235.499 kb on - strand, within ydjJat 235.701 kb on + strand, within ydjJ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
remove
233,252 + -0.7
233,253 - +0.7
233,316 - rbsK NIAGMN_01300 0.15 +1.9
233,316 - rbsK NIAGMN_01300 0.15 -0.1
233,567 - rbsK NIAGMN_01300 0.41 -1.3
233,834 + rbsK NIAGMN_01300 0.70 +0.0
234,499 + ydjI NIAGMN_01305 0.46 +0.2
235,481 - ydjJ NIAGMN_01310 0.49 -0.1
235,499 - ydjJ NIAGMN_01310 0.50 +0.6
235,701 + ydjJ NIAGMN_01310 0.70 +0.6

Or see this region's nucleotide sequence