Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01290

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttra5 and NIAGMN_01285 are separated by 281 nucleotidesNIAGMN_01285 and ydjF are separated by 117 nucleotidesydjF and ydjG are separated by 136 nucleotides NIAGMN_01280: tra5 - IS3 family transposase, at 230,135 to 230,725 tra5 NIAGMN_01285: NIAGMN_01285 - Insertion sequence 2 OrfA protein, at 231,007 to 231,177 _01285 NIAGMN_01290: ydjF - Uncharacterized HTH-type transcriptional regulator YdjF, at 231,295 to 232,053 ydjF NIAGMN_01295: ydjG - NADH-dependent methylglyoxal reductase, at 232,190 to 233,170 ydjG Position (kb) 231 232 233Strain fitness (log2 ratio) -1 0 1at 231.167 kb on + strandat 231.364 kb on + strandat 231.740 kb on - strand, within ydjFat 231.791 kb on - strand, within ydjFat 232.024 kb on - strandat 232.076 kb on - strandat 232.317 kb on - strand, within ydjGat 232.406 kb on - strand, within ydjGat 232.774 kb on - strand, within ydjGat 232.993 kb on + strand, within ydjGat 232.994 kb on - strand, within ydjG

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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231,167 + -0.1
231,364 + +0.2
231,740 - ydjF NIAGMN_01290 0.59 -0.1
231,791 - ydjF NIAGMN_01290 0.65 -0.5
232,024 - -1.1
232,076 - +1.2
232,317 - ydjG NIAGMN_01295 0.13 -0.5
232,406 - ydjG NIAGMN_01295 0.22 +0.2
232,774 - ydjG NIAGMN_01295 0.60 +1.2
232,993 + ydjG NIAGMN_01295 0.82 -0.2
232,994 - ydjG NIAGMN_01295 0.82 +1.2

Or see this region's nucleotide sequence