Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01255

Experiment: Bas61

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsppA and sIMPL are separated by 115 nucleotidessIMPL and ansA are separated by 131 nucleotides NIAGMN_01250: sppA - signal peptide peptidase SppA, at 223,921 to 225,777 sppA NIAGMN_01255: sIMPL - SIMPL domain-containing protein, at 225,893 to 226,603 sIMPL NIAGMN_01260: ansA - asparaginase, at 226,735 to 227,751 ansA Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1 2 3at 224.932 kb on - strand, within sppAat 224.932 kb on - strand, within sppAat 225.179 kb on - strand, within sppAat 225.213 kb on + strand, within sppAat 225.273 kb on + strand, within sppAat 225.853 kb on - strandat 226.002 kb on - strand, within sIMPLat 226.057 kb on - strand, within sIMPLat 226.174 kb on - strand, within sIMPLat 226.244 kb on + strand, within sIMPLat 226.696 kb on - strandat 226.700 kb on - strandat 226.700 kb on - strandat 226.806 kb on + strandat 226.944 kb on + strand, within ansAat 227.105 kb on + strand, within ansAat 227.346 kb on - strand, within ansAat 227.553 kb on + strand, within ansAat 227.553 kb on + strand, within ansAat 227.553 kb on + strand, within ansA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
remove
224,932 - sppA NIAGMN_01250 0.54 -0.8
224,932 - sppA NIAGMN_01250 0.54 +2.8
225,179 - sppA NIAGMN_01250 0.68 +0.2
225,213 + sppA NIAGMN_01250 0.70 +0.6
225,273 + sppA NIAGMN_01250 0.73 -1.6
225,853 - +1.1
226,002 - sIMPL NIAGMN_01255 0.15 -0.4
226,057 - sIMPL NIAGMN_01255 0.23 +1.2
226,174 - sIMPL NIAGMN_01255 0.40 -0.4
226,244 + sIMPL NIAGMN_01255 0.49 -1.8
226,696 - -1.0
226,700 - +2.2
226,700 - +0.4
226,806 + -2.4
226,944 + ansA NIAGMN_01260 0.21 -0.2
227,105 + ansA NIAGMN_01260 0.36 +1.8
227,346 - ansA NIAGMN_01260 0.60 +2.5
227,553 + ansA NIAGMN_01260 0.80 -0.8
227,553 + ansA NIAGMN_01260 0.80 +1.8
227,553 + ansA NIAGMN_01260 0.80 -1.4

Or see this region's nucleotide sequence