Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydjO and cedA are separated by 288 nucleotides cedA and katE are separated by 182 nucleotides katE and chbG are separated by 46 nucleotides chbG and celF are separated by 12 nucleotides
NIAGMN_01065: ydjO - Uncharacterized protein YdjO, at 187,661 to 188,416
ydjO
NIAGMN_01070: cedA - cell division activator CedA, at 188,705 to 188,968
cedA
NIAGMN_01075: katE - catalase HPII, at 189,151 to 191,412
katE
NIAGMN_01080: chbG - chitin disaccharide deacetylase, at 191,459 to 192,217
chbG
NIAGMN_01085: celF - 6-phospho-beta-glucosidase, at 192,230 to 193,582
celF
Position (kb) 189
190
191
192 Strain fitness (log2 ratio) -1
0
1
2 at 188.176 kb on - strand, within ydjO at 188.696 kb on - strand at 188.696 kb on - strand at 188.699 kb on + strand at 188.905 kb on - strand, within cedA at 189.055 kb on - strand at 189.087 kb on + strand at 189.363 kb on - strand at 189.525 kb on + strand, within katE at 189.572 kb on - strand, within katE at 189.574 kb on - strand, within katE at 189.721 kb on - strand, within katE at 189.991 kb on - strand, within katE at 190.222 kb on - strand, within katE at 190.663 kb on + strand, within katE at 190.762 kb on + strand, within katE at 190.971 kb on + strand, within katE at 191.215 kb on + strand at 191.388 kb on + strand at 191.473 kb on - strand at 191.563 kb on - strand, within chbG at 191.831 kb on - strand, within chbG at 191.831 kb on - strand, within chbG at 191.831 kb on - strand, within chbG at 192.001 kb on + strand, within chbG at 192.026 kb on - strand, within chbG at 192.349 kb on + strand at 192.377 kb on - strand, within celF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 188,176 - ydjO NIAGMN_01065 0.68 -1.0 188,696 - +1.2 188,696 - -1.1 188,699 + -0.7 188,905 - cedA NIAGMN_01070 0.76 +0.9 189,055 - +2.2 189,087 + +1.6 189,363 - -0.6 189,525 + katE NIAGMN_01075 0.17 +0.1 189,572 - katE NIAGMN_01075 0.19 -0.7 189,574 - katE NIAGMN_01075 0.19 -1.1 189,721 - katE NIAGMN_01075 0.25 -0.4 189,991 - katE NIAGMN_01075 0.37 -0.1 190,222 - katE NIAGMN_01075 0.47 -0.5 190,663 + katE NIAGMN_01075 0.67 -1.4 190,762 + katE NIAGMN_01075 0.71 +0.1 190,971 + katE NIAGMN_01075 0.80 -0.9 191,215 + +0.0 191,388 + +0.3 191,473 - -0.8 191,563 - chbG NIAGMN_01080 0.14 -0.2 191,831 - chbG NIAGMN_01080 0.49 +0.3 191,831 - chbG NIAGMN_01080 0.49 -0.4 191,831 - chbG NIAGMN_01080 0.49 -0.1 192,001 + chbG NIAGMN_01080 0.71 +1.0 192,026 - chbG NIAGMN_01080 0.75 +0.1 192,349 + -0.5 192,377 - celF NIAGMN_01085 0.11 +0.6
Or see this region's nucleotide sequence