Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00830

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsufA and ydiH are separated by 548 nucleotidesydiH and menI are separated by 99 nucleotidesmenI and ydiJ overlap by 4 nucleotides NIAGMN_00815: sufA - Fe-S cluster assembly scaffold SufA, at 139,300 to 139,668 sufA NIAGMN_00825: ydiH - Uncharacterized protein YdiH, at 140,217 to 140,405 ydiH NIAGMN_00830: menI - 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, at 140,505 to 140,915 menI NIAGMN_00835: ydiJ - Uncharacterized protein YdiJ, at 140,912 to 143,968 ydiJ Position (kb) 140 141Strain fitness (log2 ratio) -2 -1 0 1 2 3at 139.505 kb on + strand, within sufAat 139.645 kb on - strandat 139.760 kb on + strandat 139.761 kb on - strandat 139.784 kb on + strandat 139.785 kb on - strandat 139.794 kb on - strandat 139.926 kb on + strandat 139.927 kb on - strandat 140.068 kb on - strandat 140.146 kb on + strandat 140.406 kb on - strandat 140.723 kb on + strand, within menIat 140.826 kb on - strand, within menIat 140.918 kb on - strandat 141.164 kb on + strandat 141.341 kb on - strand, within ydiJat 141.343 kb on - strand, within ydiJat 141.779 kb on - strand, within ydiJ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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139,505 + sufA NIAGMN_00815 0.56 -0.4
139,645 - +3.2
139,760 + +1.7
139,761 - +1.2
139,784 + -1.4
139,785 - +1.2
139,794 - -1.4
139,926 + +0.1
139,927 - -0.5
140,068 - +0.2
140,146 + -0.0
140,406 - +2.2
140,723 + menI NIAGMN_00830 0.53 -1.5
140,826 - menI NIAGMN_00830 0.78 +2.8
140,918 - -2.1
141,164 + -0.0
141,341 - ydiJ NIAGMN_00835 0.14 -1.1
141,343 - ydiJ NIAGMN_00835 0.14 +0.5
141,779 - ydiJ NIAGMN_00835 0.28 +2.2

Or see this region's nucleotide sequence