Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00755

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydhU and NIAGMN_00750 overlap by 4 nucleotidesNIAGMN_00750 and ydhW are separated by 63 nucleotidesydhW and ydhV are separated by 12 nucleotides NIAGMN_00745: ydhU - Putative cytochrome YdhU, at 124,845 to 125,630 ydhU NIAGMN_00750: NIAGMN_00750 - Uncharacterized ferredoxin-like protein YdhX, at 125,627 to 126,295 _00750 NIAGMN_00755: ydhW - YdhW family putative oxidoreductase system protein, at 126,359 to 126,997 ydhW NIAGMN_00760: ydhV - aldehyde ferredoxin oxidoreductase, at 127,010 to 129,112 ydhV Position (kb) 126 127Strain fitness (log2 ratio) -1 0 1 2 3 4at 125.582 kb on - strandat 125.582 kb on - strandat 125.987 kb on + strand, within NIAGMN_00750at 126.124 kb on + strand, within NIAGMN_00750at 126.186 kb on + strand, within NIAGMN_00750at 126.406 kb on - strandat 126.477 kb on - strand, within ydhWat 126.543 kb on + strand, within ydhWat 126.544 kb on - strand, within ydhWat 126.544 kb on - strand, within ydhWat 126.577 kb on - strand, within ydhWat 126.703 kb on - strand, within ydhWat 127.023 kb on - strandat 127.125 kb on + strandat 127.125 kb on + strandat 127.151 kb on - strandat 127.151 kb on - strandat 127.396 kb on + strand, within ydhVat 127.486 kb on + strand, within ydhVat 127.492 kb on - strand, within ydhVat 127.624 kb on + strand, within ydhVat 127.785 kb on + strand, within ydhVat 127.785 kb on + strand, within ydhVat 127.979 kb on - strand, within ydhV

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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125,582 - -1.5
125,582 - +0.6
125,987 + NIAGMN_00750 0.54 -0.4
126,124 + NIAGMN_00750 0.74 -0.4
126,186 + NIAGMN_00750 0.84 +0.8
126,406 - -0.9
126,477 - ydhW NIAGMN_00755 0.18 -0.8
126,543 + ydhW NIAGMN_00755 0.29 -0.2
126,544 - ydhW NIAGMN_00755 0.29 +1.2
126,544 - ydhW NIAGMN_00755 0.29 -0.6
126,577 - ydhW NIAGMN_00755 0.34 +0.4
126,703 - ydhW NIAGMN_00755 0.54 -1.4
127,023 - +1.0
127,125 + -0.5
127,125 + +0.3
127,151 - +1.2
127,151 - +3.8
127,396 + ydhV NIAGMN_00760 0.18 +0.1
127,486 + ydhV NIAGMN_00760 0.23 -1.6
127,492 - ydhV NIAGMN_00760 0.23 +0.3
127,624 + ydhV NIAGMN_00760 0.29 -1.5
127,785 + ydhV NIAGMN_00760 0.37 -1.4
127,785 + ydhV NIAGMN_00760 0.37 -0.2
127,979 - ydhV NIAGMN_00760 0.46 +2.2

Or see this region's nucleotide sequence