Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydgI and folM are separated by 36 nucleotides folM and ydgC overlap by 4 nucleotides ydgC and rstA are separated by 128 nucleotides rstA and rstB are separated by 3 nucleotides
NIAGMN_00395: ydgI - Putative arginine/ornithine antiporter, at 57,636 to 59,018
ydgI
NIAGMN_00400: folM - dihydromonapterin reductase, at 59,055 to 59,777
folM
NIAGMN_00405: ydgC - Inner membrane protein YdgC, at 59,774 to 60,109
ydgC
NIAGMN_00410: rstA - two-component system response regulator RstA, at 60,238 to 60,957
rstA
NIAGMN_00415: rstB - two-component system sensor histidine kinase RstB, at 60,961 to 62,262
rstB
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 58.828 kb on + strand, within ydgI at 59.084 kb on - strand at 59.084 kb on - strand at 59.357 kb on - strand, within folM at 59.423 kb on - strand, within folM at 59.537 kb on + strand, within folM at 59.588 kb on + strand, within folM at 59.713 kb on + strand at 59.797 kb on + strand at 59.798 kb on - strand at 59.878 kb on - strand, within ydgC at 60.170 kb on - strand at 60.312 kb on + strand, within rstA at 60.315 kb on - strand, within rstA at 60.315 kb on - strand, within rstA at 60.755 kb on + strand, within rstA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 58,828 + ydgI NIAGMN_00395 0.86 -0.4 59,084 - -1.6 59,084 - +1.0 59,357 - folM NIAGMN_00400 0.42 +1.2 59,423 - folM NIAGMN_00400 0.51 -2.0 59,537 + folM NIAGMN_00400 0.67 +2.3 59,588 + folM NIAGMN_00400 0.74 -0.4 59,713 + +0.4 59,797 + +0.5 59,798 - +0.7 59,878 - ydgC NIAGMN_00405 0.31 -0.2 60,170 - +2.8 60,312 + rstA NIAGMN_00410 0.10 +0.5 60,315 - rstA NIAGMN_00410 0.11 -0.4 60,315 - rstA NIAGMN_00410 0.11 -0.7 60,755 + rstA NIAGMN_00410 0.72 -0.1
Or see this region's nucleotide sequence