Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00380

Experiment: Bas61

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttqsA and pntB are separated by 24 nucleotidespntB and pntA are separated by 10 nucleotides NIAGMN_00375: tqsA - AI-2 transporter TqsA, at 51,992 to 53,026 tqsA NIAGMN_00380: pntB - Re/Si-specific NAD(P)(+) transhydrogenase subunit beta, at 53,051 to 54,439 pntB NIAGMN_00385: pntA - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 54,450 to 55,982 pntA Position (kb) 53 54 55Strain fitness (log2 ratio) -1 0 1 2 3at 52.230 kb on + strand, within tqsAat 52.231 kb on - strand, within tqsAat 52.291 kb on + strand, within tqsAat 52.426 kb on + strand, within tqsAat 52.695 kb on - strand, within tqsAat 52.706 kb on - strand, within tqsAat 53.148 kb on + strandat 53.216 kb on - strand, within pntBat 53.344 kb on - strand, within pntBat 53.349 kb on - strand, within pntBat 53.497 kb on - strand, within pntBat 53.666 kb on - strand, within pntBat 53.861 kb on + strand, within pntBat 54.083 kb on - strand, within pntBat 54.412 kb on - strandat 54.440 kb on - strandat 54.440 kb on - strandat 54.521 kb on + strandat 54.633 kb on - strand, within pntAat 55.049 kb on - strand, within pntA

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas61
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52,230 + tqsA NIAGMN_00375 0.23 -0.4
52,231 - tqsA NIAGMN_00375 0.23 -1.0
52,291 + tqsA NIAGMN_00375 0.29 +1.2
52,426 + tqsA NIAGMN_00375 0.42 +0.1
52,695 - tqsA NIAGMN_00375 0.68 +0.2
52,706 - tqsA NIAGMN_00375 0.69 -0.4
53,148 + +0.4
53,216 - pntB NIAGMN_00380 0.12 +0.3
53,344 - pntB NIAGMN_00380 0.21 -1.4
53,349 - pntB NIAGMN_00380 0.21 +1.2
53,497 - pntB NIAGMN_00380 0.32 +0.2
53,666 - pntB NIAGMN_00380 0.44 -0.1
53,861 + pntB NIAGMN_00380 0.58 -0.4
54,083 - pntB NIAGMN_00380 0.74 -0.8
54,412 - +2.8
54,440 - +2.2
54,440 - +2.2
54,521 + +1.2
54,633 - pntA NIAGMN_00385 0.12 +0.2
55,049 - pntA NIAGMN_00385 0.39 -0.4

Or see this region's nucleotide sequence