Experiment: Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynfH and dmsD are separated by 42 nucleotides dmsD and clcB are separated by 193 nucleotides clcB and bioD overlap by 48 nucleotides bioD and mlc are separated by 124 nucleotides
NIAGMN_00315: ynfH - Anaerobic dimethyl sulfoxide reductase chain YnfH, at 41,689 to 42,543
ynfH
NIAGMN_00320: dmsD - Tat proofreading chaperone DmsD, at 42,586 to 43,200
dmsD
NIAGMN_00325: clcB - voltage-gated ClC-type chloride channel ClcB, at 43,394 to 44,650
clcB
NIAGMN_00330: bioD - dethiobiotin synthase, at 44,603 to 45,298
bioD
NIAGMN_00335: mlc - DNA-binding transcriptional repressor Mlc, at 45,423 to 46,643
mlc
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.700 kb on - strand, within clcB at 43.770 kb on + strand, within clcB at 43.897 kb on - strand, within clcB at 43.925 kb on - strand, within clcB at 44.240 kb on - strand, within clcB at 44.370 kb on + strand, within clcB at 44.400 kb on - strand, within clcB at 44.543 kb on + strand at 44.551 kb on - strand at 44.577 kb on + strand at 44.618 kb on - strand at 44.649 kb on - strand at 45.094 kb on - strand, within bioD at 45.187 kb on + strand, within bioD at 45.258 kb on - strand at 45.613 kb on - strand, within mlc
Per-strain Table
Position Strand Gene LocusTag Fraction Bas61 remove 43,700 - clcB NIAGMN_00325 0.24 +0.4 43,770 + clcB NIAGMN_00325 0.30 -0.4 43,897 - clcB NIAGMN_00325 0.40 -1.9 43,925 - clcB NIAGMN_00325 0.42 -0.0 44,240 - clcB NIAGMN_00325 0.67 +0.2 44,370 + clcB NIAGMN_00325 0.78 -0.6 44,400 - clcB NIAGMN_00325 0.80 +1.0 44,543 + -0.2 44,551 - -0.4 44,577 + +0.3 44,618 - +1.8 44,649 - +1.6 45,094 - bioD NIAGMN_00330 0.71 +0.4 45,187 + bioD NIAGMN_00330 0.84 +0.0 45,258 - -0.2 45,613 - mlc NIAGMN_00335 0.16 -0.3
Or see this region's nucleotide sequence