Experiment: iri MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_02304 and OHPLBJKB_02305 are separated by 15 nucleotides OHPLBJKB_02305 and OHPLBJKB_02306 overlap by 1 nucleotides OHPLBJKB_02306 and OHPLBJKB_02307 are separated by 170 nucleotides
OHPLBJKB_02304: OHPLBJKB_02304 - putative protein YnbC, at 2,401,321 to 2,403,078
_02304
OHPLBJKB_02305: OHPLBJKB_02305 - hypothetical protein, at 2,403,094 to 2,403,990
_02305
OHPLBJKB_02306: OHPLBJKB_02306 - Inner membrane protein YnbA, at 2,403,990 to 2,404,595
_02306
OHPLBJKB_02307: OHPLBJKB_02307 - hypothetical protein, at 2,404,766 to 2,407,072
_02307
Position (kb)
2403
2404
2405 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2403.028 kb on - strand at 2403.292 kb on + strand, within OHPLBJKB_02305 at 2403.302 kb on - strand, within OHPLBJKB_02305 at 2403.757 kb on - strand, within OHPLBJKB_02305 at 2403.886 kb on - strand, within OHPLBJKB_02305 at 2403.886 kb on - strand, within OHPLBJKB_02305 at 2404.236 kb on + strand, within OHPLBJKB_02306 at 2404.288 kb on - strand, within OHPLBJKB_02306 at 2404.310 kb on + strand, within OHPLBJKB_02306 at 2404.400 kb on + strand, within OHPLBJKB_02306 at 2404.517 kb on + strand, within OHPLBJKB_02306 at 2404.555 kb on - strand at 2404.609 kb on + strand at 2404.689 kb on - strand at 2404.689 kb on - strand at 2404.689 kb on - strand at 2404.908 kb on - strand at 2404.908 kb on - strand at 2404.910 kb on + strand at 2404.910 kb on + strand at 2404.911 kb on - strand at 2404.911 kb on - strand at 2404.911 kb on - strand at 2405.005 kb on + strand, within OHPLBJKB_02307 at 2405.051 kb on - strand, within OHPLBJKB_02307 at 2405.060 kb on + strand, within OHPLBJKB_02307 at 2405.062 kb on + strand, within OHPLBJKB_02307 at 2405.062 kb on + strand, within OHPLBJKB_02307 at 2405.063 kb on - strand, within OHPLBJKB_02307 at 2405.063 kb on - strand, within OHPLBJKB_02307 at 2405.121 kb on + strand, within OHPLBJKB_02307 at 2405.121 kb on + strand, within OHPLBJKB_02307 at 2405.124 kb on + strand, within OHPLBJKB_02307 at 2405.257 kb on + strand, within OHPLBJKB_02307 at 2405.261 kb on + strand, within OHPLBJKB_02307 at 2405.298 kb on - strand, within OHPLBJKB_02307 at 2405.318 kb on + strand, within OHPLBJKB_02307 at 2405.319 kb on - strand, within OHPLBJKB_02307 at 2405.319 kb on - strand, within OHPLBJKB_02307 at 2405.350 kb on + strand, within OHPLBJKB_02307 at 2405.553 kb on - strand, within OHPLBJKB_02307
Per-strain Table
Position Strand Gene LocusTag Fraction iri MOI1 remove 2,403,028 - -0.4 2,403,292 + OHPLBJKB_02305 0.22 +2.3 2,403,302 - OHPLBJKB_02305 0.23 +0.5 2,403,757 - OHPLBJKB_02305 0.74 -0.0 2,403,886 - OHPLBJKB_02305 0.88 +0.1 2,403,886 - OHPLBJKB_02305 0.88 -0.4 2,404,236 + OHPLBJKB_02306 0.41 +0.5 2,404,288 - OHPLBJKB_02306 0.49 -0.2 2,404,310 + OHPLBJKB_02306 0.53 +0.0 2,404,400 + OHPLBJKB_02306 0.68 +0.7 2,404,517 + OHPLBJKB_02306 0.87 -0.5 2,404,555 - -2.2 2,404,609 + -1.5 2,404,689 - -0.1 2,404,689 - -0.1 2,404,689 - +0.5 2,404,908 - -0.2 2,404,908 - +0.1 2,404,910 + -1.1 2,404,910 + -0.9 2,404,911 - -0.9 2,404,911 - -0.1 2,404,911 - -2.3 2,405,005 + OHPLBJKB_02307 0.10 -0.9 2,405,051 - OHPLBJKB_02307 0.12 -1.1 2,405,060 + OHPLBJKB_02307 0.13 -1.1 2,405,062 + OHPLBJKB_02307 0.13 -0.3 2,405,062 + OHPLBJKB_02307 0.13 +0.1 2,405,063 - OHPLBJKB_02307 0.13 -0.3 2,405,063 - OHPLBJKB_02307 0.13 -1.0 2,405,121 + OHPLBJKB_02307 0.15 +2.0 2,405,121 + OHPLBJKB_02307 0.15 -0.6 2,405,124 + OHPLBJKB_02307 0.16 -0.6 2,405,257 + OHPLBJKB_02307 0.21 +0.9 2,405,261 + OHPLBJKB_02307 0.21 +0.3 2,405,298 - OHPLBJKB_02307 0.23 +0.3 2,405,318 + OHPLBJKB_02307 0.24 +0.5 2,405,319 - OHPLBJKB_02307 0.24 +0.5 2,405,319 - OHPLBJKB_02307 0.24 +1.2 2,405,350 + OHPLBJKB_02307 0.25 -0.0 2,405,553 - OHPLBJKB_02307 0.34 -0.0
Or see this region's nucleotide sequence