Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02306

Experiment: iri MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02304 and OHPLBJKB_02305 are separated by 15 nucleotidesOHPLBJKB_02305 and OHPLBJKB_02306 overlap by 1 nucleotidesOHPLBJKB_02306 and OHPLBJKB_02307 are separated by 170 nucleotides OHPLBJKB_02304: OHPLBJKB_02304 - putative protein YnbC, at 2,401,321 to 2,403,078 _02304 OHPLBJKB_02305: OHPLBJKB_02305 - hypothetical protein, at 2,403,094 to 2,403,990 _02305 OHPLBJKB_02306: OHPLBJKB_02306 - Inner membrane protein YnbA, at 2,403,990 to 2,404,595 _02306 OHPLBJKB_02307: OHPLBJKB_02307 - hypothetical protein, at 2,404,766 to 2,407,072 _02307 Position (kb) 2403 2404 2405Strain fitness (log2 ratio) -2 -1 0 1 2at 2403.028 kb on - strandat 2403.292 kb on + strand, within OHPLBJKB_02305at 2403.302 kb on - strand, within OHPLBJKB_02305at 2403.757 kb on - strand, within OHPLBJKB_02305at 2403.886 kb on - strand, within OHPLBJKB_02305at 2403.886 kb on - strand, within OHPLBJKB_02305at 2404.236 kb on + strand, within OHPLBJKB_02306at 2404.288 kb on - strand, within OHPLBJKB_02306at 2404.310 kb on + strand, within OHPLBJKB_02306at 2404.400 kb on + strand, within OHPLBJKB_02306at 2404.517 kb on + strand, within OHPLBJKB_02306at 2404.555 kb on - strandat 2404.609 kb on + strandat 2404.689 kb on - strandat 2404.689 kb on - strandat 2404.689 kb on - strandat 2404.908 kb on - strandat 2404.908 kb on - strandat 2404.910 kb on + strandat 2404.910 kb on + strandat 2404.911 kb on - strandat 2404.911 kb on - strandat 2404.911 kb on - strandat 2405.005 kb on + strand, within OHPLBJKB_02307at 2405.051 kb on - strand, within OHPLBJKB_02307at 2405.060 kb on + strand, within OHPLBJKB_02307at 2405.062 kb on + strand, within OHPLBJKB_02307at 2405.062 kb on + strand, within OHPLBJKB_02307at 2405.063 kb on - strand, within OHPLBJKB_02307at 2405.063 kb on - strand, within OHPLBJKB_02307at 2405.121 kb on + strand, within OHPLBJKB_02307at 2405.121 kb on + strand, within OHPLBJKB_02307at 2405.124 kb on + strand, within OHPLBJKB_02307at 2405.257 kb on + strand, within OHPLBJKB_02307at 2405.261 kb on + strand, within OHPLBJKB_02307at 2405.298 kb on - strand, within OHPLBJKB_02307at 2405.318 kb on + strand, within OHPLBJKB_02307at 2405.319 kb on - strand, within OHPLBJKB_02307at 2405.319 kb on - strand, within OHPLBJKB_02307at 2405.350 kb on + strand, within OHPLBJKB_02307at 2405.553 kb on - strand, within OHPLBJKB_02307

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Per-strain Table

Position Strand Gene LocusTag Fraction iri MOI1
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2,403,028 - -0.4
2,403,292 + OHPLBJKB_02305 0.22 +2.3
2,403,302 - OHPLBJKB_02305 0.23 +0.5
2,403,757 - OHPLBJKB_02305 0.74 -0.0
2,403,886 - OHPLBJKB_02305 0.88 +0.1
2,403,886 - OHPLBJKB_02305 0.88 -0.4
2,404,236 + OHPLBJKB_02306 0.41 +0.5
2,404,288 - OHPLBJKB_02306 0.49 -0.2
2,404,310 + OHPLBJKB_02306 0.53 +0.0
2,404,400 + OHPLBJKB_02306 0.68 +0.7
2,404,517 + OHPLBJKB_02306 0.87 -0.5
2,404,555 - -2.2
2,404,609 + -1.5
2,404,689 - -0.1
2,404,689 - -0.1
2,404,689 - +0.5
2,404,908 - -0.2
2,404,908 - +0.1
2,404,910 + -1.1
2,404,910 + -0.9
2,404,911 - -0.9
2,404,911 - -0.1
2,404,911 - -2.3
2,405,005 + OHPLBJKB_02307 0.10 -0.9
2,405,051 - OHPLBJKB_02307 0.12 -1.1
2,405,060 + OHPLBJKB_02307 0.13 -1.1
2,405,062 + OHPLBJKB_02307 0.13 -0.3
2,405,062 + OHPLBJKB_02307 0.13 +0.1
2,405,063 - OHPLBJKB_02307 0.13 -0.3
2,405,063 - OHPLBJKB_02307 0.13 -1.0
2,405,121 + OHPLBJKB_02307 0.15 +2.0
2,405,121 + OHPLBJKB_02307 0.15 -0.6
2,405,124 + OHPLBJKB_02307 0.16 -0.6
2,405,257 + OHPLBJKB_02307 0.21 +0.9
2,405,261 + OHPLBJKB_02307 0.21 +0.3
2,405,298 - OHPLBJKB_02307 0.23 +0.3
2,405,318 + OHPLBJKB_02307 0.24 +0.5
2,405,319 - OHPLBJKB_02307 0.24 +0.5
2,405,319 - OHPLBJKB_02307 0.24 +1.2
2,405,350 + OHPLBJKB_02307 0.25 -0.0
2,405,553 - OHPLBJKB_02307 0.34 -0.0

Or see this region's nucleotide sequence