Experiment: iri MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_01099 and OHPLBJKB_01100 are separated by 41 nucleotides OHPLBJKB_01100 and OHPLBJKB_01101 are separated by 75 nucleotides OHPLBJKB_01101 and OHPLBJKB_01102 are separated by 15 nucleotides OHPLBJKB_01102 and OHPLBJKB_01103 overlap by 11 nucleotides OHPLBJKB_01103 and OHPLBJKB_01104 are separated by 209 nucleotides
OHPLBJKB_01099: OHPLBJKB_01099 - tRNA (guanine-N(1)-)-methyltransferase, at 1,124,898 to 1,125,665
_01099
OHPLBJKB_01100: OHPLBJKB_01100 - 50S ribosomal protein L19, at 1,125,707 to 1,126,054
_01100
OHPLBJKB_01101: OHPLBJKB_01101 - hypothetical protein, at 1,126,130 to 1,126,612
_01101
OHPLBJKB_01102: OHPLBJKB_01102 - Diguanylate cyclase DgcN, at 1,126,628 to 1,127,854
_01102
OHPLBJKB_01103: OHPLBJKB_01103 - hypothetical protein, at 1,127,844 to 1,128,362
_01103
OHPLBJKB_01104: OHPLBJKB_01104 - IS1 family transposase IS1S, at 1,128,572 to 1,128,838
_01104
Position (kb) 1126
1127
1128 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1126.138 kb on + strand at 1126.138 kb on + strand at 1126.139 kb on - strand at 1126.139 kb on - strand at 1126.142 kb on - strand at 1126.142 kb on - strand at 1126.142 kb on - strand at 1126.142 kb on - strand at 1126.200 kb on - strand, within OHPLBJKB_01101 at 1126.302 kb on - strand, within OHPLBJKB_01101 at 1126.314 kb on + strand, within OHPLBJKB_01101 at 1126.314 kb on + strand, within OHPLBJKB_01101 at 1126.314 kb on + strand, within OHPLBJKB_01101 at 1126.315 kb on - strand, within OHPLBJKB_01101 at 1126.315 kb on - strand, within OHPLBJKB_01101 at 1126.315 kb on - strand, within OHPLBJKB_01101 at 1126.315 kb on - strand, within OHPLBJKB_01101 at 1126.315 kb on - strand, within OHPLBJKB_01101 at 1126.315 kb on - strand, within OHPLBJKB_01101 at 1126.315 kb on - strand, within OHPLBJKB_01101 at 1126.315 kb on - strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.329 kb on + strand, within OHPLBJKB_01101 at 1126.330 kb on - strand, within OHPLBJKB_01101 at 1126.330 kb on - strand, within OHPLBJKB_01101 at 1126.330 kb on - strand, within OHPLBJKB_01101 at 1126.330 kb on - strand, within OHPLBJKB_01101 at 1126.330 kb on - strand, within OHPLBJKB_01101 at 1126.330 kb on - strand, within OHPLBJKB_01101 at 1126.330 kb on - strand, within OHPLBJKB_01101 at 1126.364 kb on + strand, within OHPLBJKB_01101 at 1126.496 kb on - strand, within OHPLBJKB_01101 at 1126.535 kb on - strand, within OHPLBJKB_01101 at 1126.607 kb on + strand at 1126.618 kb on + strand at 1126.618 kb on + strand at 1126.619 kb on - strand at 1126.620 kb on + strand at 1126.620 kb on + strand at 1126.620 kb on + strand at 1126.621 kb on - strand at 1126.630 kb on - strand at 1126.668 kb on + strand at 1126.668 kb on + strand at 1126.668 kb on + strand at 1126.668 kb on + strand at 1126.669 kb on - strand at 1126.669 kb on - strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.672 kb on + strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.673 kb on - strand at 1126.695 kb on - strand at 1126.742 kb on + strand at 1126.743 kb on - strand at 1126.743 kb on - strand at 1126.814 kb on + strand, within OHPLBJKB_01102 at 1126.814 kb on + strand, within OHPLBJKB_01102 at 1126.815 kb on - strand, within OHPLBJKB_01102 at 1126.815 kb on - strand, within OHPLBJKB_01102 at 1126.815 kb on - strand, within OHPLBJKB_01102 at 1126.841 kb on + strand, within OHPLBJKB_01102 at 1126.841 kb on + strand, within OHPLBJKB_01102 at 1126.841 kb on + strand, within OHPLBJKB_01102 at 1126.842 kb on - strand, within OHPLBJKB_01102 at 1126.842 kb on - strand, within OHPLBJKB_01102 at 1126.842 kb on - strand, within OHPLBJKB_01102 at 1126.842 kb on - strand, within OHPLBJKB_01102 at 1126.842 kb on - strand, within OHPLBJKB_01102 at 1126.842 kb on - strand, within OHPLBJKB_01102 at 1126.848 kb on + strand, within OHPLBJKB_01102 at 1126.848 kb on + strand, within OHPLBJKB_01102 at 1126.849 kb on - strand, within OHPLBJKB_01102 at 1126.891 kb on + strand, within OHPLBJKB_01102 at 1126.891 kb on + strand, within OHPLBJKB_01102 at 1126.891 kb on + strand, within OHPLBJKB_01102 at 1126.892 kb on - strand, within OHPLBJKB_01102 at 1126.892 kb on - strand, within OHPLBJKB_01102 at 1126.892 kb on - strand, within OHPLBJKB_01102 at 1126.892 kb on - strand, within OHPLBJKB_01102 at 1126.946 kb on - strand, within OHPLBJKB_01102 at 1126.969 kb on + strand, within OHPLBJKB_01102 at 1126.969 kb on + strand, within OHPLBJKB_01102 at 1126.980 kb on + strand, within OHPLBJKB_01102 at 1127.006 kb on + strand, within OHPLBJKB_01102 at 1127.105 kb on + strand, within OHPLBJKB_01102 at 1127.106 kb on - strand, within OHPLBJKB_01102 at 1127.106 kb on - strand, within OHPLBJKB_01102 at 1127.117 kb on + strand, within OHPLBJKB_01102 at 1127.117 kb on + strand, within OHPLBJKB_01102 at 1127.117 kb on + strand, within OHPLBJKB_01102 at 1127.267 kb on + strand, within OHPLBJKB_01102 at 1127.268 kb on - strand, within OHPLBJKB_01102 at 1127.268 kb on - strand, within OHPLBJKB_01102 at 1127.268 kb on - strand, within OHPLBJKB_01102 at 1127.268 kb on - strand, within OHPLBJKB_01102 at 1127.268 kb on - strand, within OHPLBJKB_01102 at 1127.268 kb on - strand, within OHPLBJKB_01102 at 1127.282 kb on - strand, within OHPLBJKB_01102 at 1127.330 kb on - strand, within OHPLBJKB_01102 at 1127.356 kb on + strand, within OHPLBJKB_01102 at 1127.356 kb on + strand, within OHPLBJKB_01102 at 1127.390 kb on - strand, within OHPLBJKB_01102 at 1127.426 kb on + strand, within OHPLBJKB_01102 at 1127.426 kb on + strand, within OHPLBJKB_01102 at 1127.426 kb on + strand, within OHPLBJKB_01102 at 1127.426 kb on + strand, within OHPLBJKB_01102 at 1127.427 kb on - strand, within OHPLBJKB_01102 at 1127.503 kb on + strand, within OHPLBJKB_01102 at 1127.535 kb on + strand, within OHPLBJKB_01102 at 1127.566 kb on + strand, within OHPLBJKB_01102 at 1127.573 kb on + strand, within OHPLBJKB_01102 at 1127.574 kb on - strand, within OHPLBJKB_01102 at 1127.670 kb on + strand, within OHPLBJKB_01102 at 1127.670 kb on + strand, within OHPLBJKB_01102 at 1127.671 kb on - strand, within OHPLBJKB_01102 at 1127.767 kb on + strand at 1127.768 kb on - strand at 1127.773 kb on + strand at 1127.773 kb on + strand at 1127.777 kb on + strand at 1127.777 kb on + strand at 1127.777 kb on + strand at 1127.778 kb on - strand at 1127.778 kb on - strand at 1127.813 kb on - strand at 1127.813 kb on - strand at 1127.827 kb on + strand at 1127.840 kb on - strand at 1127.874 kb on + strand at 1127.874 kb on + strand at 1127.895 kb on + strand at 1127.896 kb on - strand, within OHPLBJKB_01103 at 1127.896 kb on - strand, within OHPLBJKB_01103 at 1127.896 kb on - strand, within OHPLBJKB_01103 at 1127.946 kb on - strand, within OHPLBJKB_01103 at 1128.007 kb on - strand, within OHPLBJKB_01103 at 1128.040 kb on - strand, within OHPLBJKB_01103 at 1128.165 kb on + strand, within OHPLBJKB_01103 at 1128.165 kb on + strand, within OHPLBJKB_01103 at 1128.174 kb on - strand, within OHPLBJKB_01103 at 1128.176 kb on + strand, within OHPLBJKB_01103 at 1128.197 kb on + strand, within OHPLBJKB_01103 at 1128.197 kb on + strand, within OHPLBJKB_01103 at 1128.197 kb on + strand, within OHPLBJKB_01103 at 1128.197 kb on + strand, within OHPLBJKB_01103 at 1128.197 kb on + strand, within OHPLBJKB_01103 at 1128.197 kb on + strand, within OHPLBJKB_01103 at 1128.201 kb on + strand, within OHPLBJKB_01103 at 1128.201 kb on + strand, within OHPLBJKB_01103 at 1128.202 kb on - strand, within OHPLBJKB_01103 at 1128.202 kb on - strand, within OHPLBJKB_01103 at 1128.202 kb on - strand, within OHPLBJKB_01103 at 1128.202 kb on - strand, within OHPLBJKB_01103 at 1128.202 kb on - strand, within OHPLBJKB_01103 at 1128.202 kb on - strand, within OHPLBJKB_01103 at 1128.202 kb on - strand, within OHPLBJKB_01103 at 1128.238 kb on + strand, within OHPLBJKB_01103 at 1128.263 kb on + strand, within OHPLBJKB_01103 at 1128.264 kb on - strand, within OHPLBJKB_01103 at 1128.264 kb on - strand, within OHPLBJKB_01103 at 1128.264 kb on - strand, within OHPLBJKB_01103 at 1128.264 kb on - strand, within OHPLBJKB_01103 at 1128.336 kb on + strand at 1128.337 kb on - strand at 1128.337 kb on - strand at 1128.337 kb on - strand at 1128.337 kb on - strand at 1128.421 kb on - strand at 1128.421 kb on - strand at 1128.463 kb on - strand at 1128.476 kb on + strand at 1128.510 kb on - strand at 1128.510 kb on - strand at 1128.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction iri MOI1 remove 1,126,138 + -1.3 1,126,138 + -0.5 1,126,139 - +0.1 1,126,139 - -0.5 1,126,142 - +0.1 1,126,142 - -0.6 1,126,142 - -1.2 1,126,142 - -1.1 1,126,200 - OHPLBJKB_01101 0.14 -0.4 1,126,302 - OHPLBJKB_01101 0.36 +0.2 1,126,314 + OHPLBJKB_01101 0.38 -0.7 1,126,314 + OHPLBJKB_01101 0.38 -0.7 1,126,314 + OHPLBJKB_01101 0.38 -0.3 1,126,315 - OHPLBJKB_01101 0.38 +0.8 1,126,315 - OHPLBJKB_01101 0.38 -1.4 1,126,315 - OHPLBJKB_01101 0.38 -0.8 1,126,315 - OHPLBJKB_01101 0.38 -0.7 1,126,315 - OHPLBJKB_01101 0.38 -0.2 1,126,315 - OHPLBJKB_01101 0.38 -0.3 1,126,315 - OHPLBJKB_01101 0.38 +0.8 1,126,315 - OHPLBJKB_01101 0.38 -1.9 1,126,329 + OHPLBJKB_01101 0.41 +0.4 1,126,329 + OHPLBJKB_01101 0.41 +0.5 1,126,329 + OHPLBJKB_01101 0.41 -0.4 1,126,329 + OHPLBJKB_01101 0.41 +1.6 1,126,329 + OHPLBJKB_01101 0.41 -0.0 1,126,329 + OHPLBJKB_01101 0.41 +0.9 1,126,329 + OHPLBJKB_01101 0.41 -1.6 1,126,329 + OHPLBJKB_01101 0.41 +0.3 1,126,329 + OHPLBJKB_01101 0.41 -1.2 1,126,329 + OHPLBJKB_01101 0.41 -0.4 1,126,330 - OHPLBJKB_01101 0.41 -0.1 1,126,330 - OHPLBJKB_01101 0.41 -0.3 1,126,330 - OHPLBJKB_01101 0.41 -1.1 1,126,330 - OHPLBJKB_01101 0.41 -0.5 1,126,330 - OHPLBJKB_01101 0.41 -0.2 1,126,330 - OHPLBJKB_01101 0.41 +0.8 1,126,330 - OHPLBJKB_01101 0.41 -0.4 1,126,364 + OHPLBJKB_01101 0.48 +0.2 1,126,496 - OHPLBJKB_01101 0.76 -0.2 1,126,535 - OHPLBJKB_01101 0.84 -1.0 1,126,607 + -1.0 1,126,618 + +0.7 1,126,618 + -0.1 1,126,619 - -2.0 1,126,620 + -0.5 1,126,620 + -0.0 1,126,620 + -1.2 1,126,621 - +0.7 1,126,630 - +1.3 1,126,668 + +0.0 1,126,668 + -0.4 1,126,668 + +0.1 1,126,668 + +0.5 1,126,669 - -1.3 1,126,669 - +0.3 1,126,672 + -0.5 1,126,672 + +0.8 1,126,672 + +0.3 1,126,672 + -1.3 1,126,672 + +0.6 1,126,672 + -1.0 1,126,672 + -0.6 1,126,672 + -1.7 1,126,672 + -0.7 1,126,672 + +0.9 1,126,672 + +0.1 1,126,672 + +1.0 1,126,672 + -0.3 1,126,673 - +0.3 1,126,673 - -0.9 1,126,673 - -0.3 1,126,673 - +0.1 1,126,673 - +0.1 1,126,673 - -0.2 1,126,673 - +0.3 1,126,673 - -1.1 1,126,673 - -0.6 1,126,673 - -1.4 1,126,673 - -0.3 1,126,673 - +0.7 1,126,673 - -0.9 1,126,695 - +0.5 1,126,742 + -0.6 1,126,743 - +0.4 1,126,743 - +0.1 1,126,814 + OHPLBJKB_01102 0.15 -0.9 1,126,814 + OHPLBJKB_01102 0.15 -1.2 1,126,815 - OHPLBJKB_01102 0.15 -0.8 1,126,815 - OHPLBJKB_01102 0.15 -0.9 1,126,815 - OHPLBJKB_01102 0.15 -0.9 1,126,841 + OHPLBJKB_01102 0.17 +0.5 1,126,841 + OHPLBJKB_01102 0.17 -0.1 1,126,841 + OHPLBJKB_01102 0.17 -0.1 1,126,842 - OHPLBJKB_01102 0.17 +0.3 1,126,842 - OHPLBJKB_01102 0.17 -0.6 1,126,842 - OHPLBJKB_01102 0.17 +0.4 1,126,842 - OHPLBJKB_01102 0.17 -1.0 1,126,842 - OHPLBJKB_01102 0.17 -2.4 1,126,842 - OHPLBJKB_01102 0.17 +1.2 1,126,848 + OHPLBJKB_01102 0.18 +0.1 1,126,848 + OHPLBJKB_01102 0.18 -0.2 1,126,849 - OHPLBJKB_01102 0.18 -0.9 1,126,891 + OHPLBJKB_01102 0.21 -1.3 1,126,891 + OHPLBJKB_01102 0.21 +0.9 1,126,891 + OHPLBJKB_01102 0.21 -0.2 1,126,892 - OHPLBJKB_01102 0.22 -1.2 1,126,892 - OHPLBJKB_01102 0.22 +1.1 1,126,892 - OHPLBJKB_01102 0.22 -0.3 1,126,892 - OHPLBJKB_01102 0.22 -0.5 1,126,946 - OHPLBJKB_01102 0.26 +0.4 1,126,969 + OHPLBJKB_01102 0.28 -0.5 1,126,969 + OHPLBJKB_01102 0.28 -0.5 1,126,980 + OHPLBJKB_01102 0.29 -0.7 1,127,006 + OHPLBJKB_01102 0.31 -1.4 1,127,105 + OHPLBJKB_01102 0.39 -2.3 1,127,106 - OHPLBJKB_01102 0.39 +0.4 1,127,106 - OHPLBJKB_01102 0.39 -1.1 1,127,117 + OHPLBJKB_01102 0.40 +0.9 1,127,117 + OHPLBJKB_01102 0.40 +1.4 1,127,117 + OHPLBJKB_01102 0.40 +0.2 1,127,267 + OHPLBJKB_01102 0.52 -1.3 1,127,268 - OHPLBJKB_01102 0.52 -0.2 1,127,268 - OHPLBJKB_01102 0.52 -0.7 1,127,268 - OHPLBJKB_01102 0.52 -0.1 1,127,268 - OHPLBJKB_01102 0.52 +1.1 1,127,268 - OHPLBJKB_01102 0.52 +0.4 1,127,268 - OHPLBJKB_01102 0.52 +0.6 1,127,282 - OHPLBJKB_01102 0.53 -0.7 1,127,330 - OHPLBJKB_01102 0.57 -0.4 1,127,356 + OHPLBJKB_01102 0.59 -1.2 1,127,356 + OHPLBJKB_01102 0.59 +0.2 1,127,390 - OHPLBJKB_01102 0.62 -0.4 1,127,426 + OHPLBJKB_01102 0.65 -0.7 1,127,426 + OHPLBJKB_01102 0.65 -0.9 1,127,426 + OHPLBJKB_01102 0.65 -1.6 1,127,426 + OHPLBJKB_01102 0.65 -0.0 1,127,427 - OHPLBJKB_01102 0.65 -0.4 1,127,503 + OHPLBJKB_01102 0.71 -0.2 1,127,535 + OHPLBJKB_01102 0.74 -0.5 1,127,566 + OHPLBJKB_01102 0.76 -0.6 1,127,573 + OHPLBJKB_01102 0.77 +0.1 1,127,574 - OHPLBJKB_01102 0.77 -0.1 1,127,670 + OHPLBJKB_01102 0.85 +0.8 1,127,670 + OHPLBJKB_01102 0.85 -1.2 1,127,671 - OHPLBJKB_01102 0.85 -0.4 1,127,767 + -0.2 1,127,768 - -0.1 1,127,773 + +1.9 1,127,773 + +0.4 1,127,777 + -1.5 1,127,777 + -0.6 1,127,777 + -1.1 1,127,778 - -2.4 1,127,778 - +0.1 1,127,813 - +0.5 1,127,813 - +0.8 1,127,827 + +0.1 1,127,840 - -0.3 1,127,874 + +0.2 1,127,874 + +0.2 1,127,895 + +0.8 1,127,896 - OHPLBJKB_01103 0.10 -0.5 1,127,896 - OHPLBJKB_01103 0.10 -0.2 1,127,896 - OHPLBJKB_01103 0.10 -0.3 1,127,946 - OHPLBJKB_01103 0.20 -0.1 1,128,007 - OHPLBJKB_01103 0.31 +0.1 1,128,040 - OHPLBJKB_01103 0.38 -0.4 1,128,165 + OHPLBJKB_01103 0.62 -1.0 1,128,165 + OHPLBJKB_01103 0.62 +1.9 1,128,174 - OHPLBJKB_01103 0.64 -0.4 1,128,176 + OHPLBJKB_01103 0.64 -0.9 1,128,197 + OHPLBJKB_01103 0.68 -2.1 1,128,197 + OHPLBJKB_01103 0.68 +0.3 1,128,197 + OHPLBJKB_01103 0.68 -0.4 1,128,197 + OHPLBJKB_01103 0.68 -1.8 1,128,197 + OHPLBJKB_01103 0.68 -0.1 1,128,197 + OHPLBJKB_01103 0.68 -0.4 1,128,201 + OHPLBJKB_01103 0.69 -0.3 1,128,201 + OHPLBJKB_01103 0.69 +0.3 1,128,202 - OHPLBJKB_01103 0.69 +4.6 1,128,202 - OHPLBJKB_01103 0.69 -1.2 1,128,202 - OHPLBJKB_01103 0.69 +1.0 1,128,202 - OHPLBJKB_01103 0.69 -0.3 1,128,202 - OHPLBJKB_01103 0.69 +0.2 1,128,202 - OHPLBJKB_01103 0.69 -0.6 1,128,202 - OHPLBJKB_01103 0.69 -0.8 1,128,238 + OHPLBJKB_01103 0.76 +0.5 1,128,263 + OHPLBJKB_01103 0.81 +1.2 1,128,264 - OHPLBJKB_01103 0.81 -0.3 1,128,264 - OHPLBJKB_01103 0.81 -0.3 1,128,264 - OHPLBJKB_01103 0.81 +0.7 1,128,264 - OHPLBJKB_01103 0.81 +0.0 1,128,336 + -0.6 1,128,337 - +0.0 1,128,337 - -0.7 1,128,337 - -0.0 1,128,337 - -0.0 1,128,421 - -0.4 1,128,421 - -0.3 1,128,463 - +0.2 1,128,476 + +1.0 1,128,510 - -0.9 1,128,510 - -0.3 1,128,510 - -1.7
Or see this region's nucleotide sequence